PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462859972
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family CPP
Protein Properties Length: 550aa    MW: 60709.1 Da    PI: 9.2124
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462859972genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR452.1e-1477115241
        TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                +kk+CnCk+s+Clk+YCeCfaag++C+  C+C++C N+ e
  462859972  77 RKKHCNCKNSHCLKLYCECFAAGVYCDG-CNCKHCGNTLE 115
                689*************************.********976 PP
2TCR491.2e-15161200140
        TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                k++kgC+Ckks ClkkYCeCf+a+  Cs++C+C dCkN e
  462859972 161 KHNKGCHCKKSFCLKKYCECFQANILCSKNCRCMDCKNFE 200
                589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011149.8E-1576116IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.18477201IPR005172CRC domain
PfamPF036383.1E-1178113IPR005172CRC domain
SMARTSM011141.1E-17161202IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.4E-12164199IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MEQEKQQGME PPAPAPPPAA ATEPGAPPQP PPPPPQQQQP KPAISVQPVM PVTRPWPVAF  60
TPMKPVVEMK NGTPMKRKKH CNCKNSHCLK LYCECFAAGV YCDGCNCKHC GNTLENEKIR  120
QAAINNTKQR NPNAFQPKIE NISNNVSVRK DDAGAAPSLP KHNKGCHCKK SFCLKKYCEC  180
FQANILCSKN CRCMDCKNFE GSEELQAARQ GDISCDRNNV QQAANVALNG AIGSSGYRFS  240
PVRKKRPPEG PSAQRINGEE SMIQARFQEM LPMMLHQLDE GALVTYRINL EWFIGNKMEK  300
EMDREICTND IANFGANKEE VQKAASGLGN VTTANQQNTG EFGSQFSNSQ EDCRPASPGT  360
QALMCDEQDL TFGTDYRSPI PPALPDEDIS ELRTAQENAV MRAFGNCLRR IITRGQKQNA  420
GKKEKTTKII AAPSAATTSA SAFTKTEWRK APTAIIKFRA SKRNPLQQAR FRGLLTNNRG  480
NQPVSGWMGW ISTPLERKRR RVGWPVKGGF STSRWIREGQ EGPPSGGVKV GLGGAAVAGF  540
YWDFEIRDYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-237820411126Protein lin-54 homolog
5fd3_B2e-237820411126Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1496500RKRRR
2497501KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMap462859972
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810512.11e-180protein tesmin/TSO1-like CXC 5 isoform X1
TrEMBLA0A0A9D9J60.0A0A0A9D9J6_ARUDO; Uncharacterized protein
STRINGPavir.Da01744.1.p1e-180(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57552653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.17e-74Tesmin/TSO1-like CXC domain-containing protein