PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462859904 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 182aa MW: 19854.4 Da PI: 10.2531 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 66.3 | 8.5e-21 | 41 | 172 | 1 | 103 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk........leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra............. 77 lp+G++F+Ptd+el+ e+L++kv+ + ++++ i+ +i++++P++Lp ++++ + +fF++ +k+y+tg+rk+r+ 462859904 41 LPAGVKFDPTDQELI-EHLEAKVRPGTaaapshplIDEFIPtIEGEdGICYTHPEKLP-GLTKDGLSRHFFHRPSKAYTTGTRKRRKiqpptsssssapa 138 799************.99******999777775553333333776646**********.455566799******************88************ PP NAM 78 .........tksgyWkatgkdkevlskkgelvglk 103 ++ +W++tgk+++v++ g++ g k 462859904 139 apqqqqqqqRSETRWHKTGKTRPVVV-AGRQRGRK 172 ****9998755789***********9.77777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.28E-21 | 33 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 15.851 | 41 | 182 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.0E-7 | 42 | 163 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MDGGAATGSG GGLGDSKYMS ESSCCPRCGH KISRLLDWVG LPAGVKFDPT DQELIEHLEA 60 KVRPGTAAAP SHPLIDEFIP TIEGEDGICY THPEKLPGLT KDGLSRHFFH RPSKAYTTGT 120 RKRRKIQPPT SSSSSAPAAP QQQQQQQRSE TRWHKTGKTR PVVVAGRQRG RKPIYGASDR 180 RL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462859904 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020399940.1 | 2e-89 | NAC domain-containing protein 75 isoform X2 | ||||
Swissprot | Q9M0F8 | 7e-67 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | A0A3L6DFR4 | 1e-88 | A0A3L6DFR4_MAIZE; NAC domain-containing protein 73 | ||||
STRING | Si006435m | 1e-84 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1453 | 38 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 2e-65 | NAC domain containing protein 75 |
Publications ? help Back to Top | |||
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