PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462859904
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 182aa    MW: 19854.4 Da    PI: 10.2531
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462859904genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM66.38.5e-21411721103
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk........leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra............. 77 
                lp+G++F+Ptd+el+ e+L++kv+  +        ++++   i+   +i++++P++Lp  ++++  + +fF++ +k+y+tg+rk+r+             
  462859904  41 LPAGVKFDPTDQELI-EHLEAKVRPGTaaapshplIDEFIPtIEGEdGICYTHPEKLP-GLTKDGLSRHFFHRPSKAYTTGTRKRRKiqpptsssssapa 138
                799************.99******999777775553333333776646**********.455566799******************88************ PP

        NAM  78 .........tksgyWkatgkdkevlskkgelvglk 103
                          ++ +W++tgk+++v++  g++ g k
  462859904 139 apqqqqqqqRSETRWHKTGKTRPVVV-AGRQRGRK 172
                ****9998755789***********9.77777776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-2133174IPR003441NAC domain
PROSITE profilePS5100515.85141182IPR003441NAC domain
PfamPF023655.0E-742163IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MDGGAATGSG GGLGDSKYMS ESSCCPRCGH KISRLLDWVG LPAGVKFDPT DQELIEHLEA  60
KVRPGTAAAP SHPLIDEFIP TIEGEDGICY THPEKLPGLT KDGLSRHFFH RPSKAYTTGT  120
RKRRKIQPPT SSSSSAPAAP QQQQQQQRSE TRWHKTGKTR PVVVAGRQRG RKPIYGASDR  180
RL
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462859904
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020399940.12e-89NAC domain-containing protein 75 isoform X2
SwissprotQ9M0F87e-67NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A3L6DFR41e-88A0A3L6DFR4_MAIZE; NAC domain-containing protein 73
STRINGSi006435m1e-84(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.12e-65NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]