PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462859892 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 106aa MW: 11361.7 Da PI: 4.6932 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 32.5 | 2.5e-10 | 46 | 102 | 1 | 48 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk........leleev.ikev.diykvePwdLp 48 lp+G++F+Ptd+el+ e+L++kv+ ++ ++++ i+ +i++++P++Lp 462859892 46 LPAGVKFDPTDQELI-EHLEAKVRPSTaaapshplIDEFIPtIEGEdGICYTHPEKLP 102 799************.99******999777775553333333776646*********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-10 | 38 | 104 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 11.746 | 46 | 106 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence Send to blast |
MDGGAATGSG GGLGDSTQEH QKYMSESSRC PRCGHKISRL LDWVGLPAGV KFDPTDQELI 60 EHLEAKVRPS TAAAPSHPLI DEFIPTIEGE DGICYTHPEK LPGEFS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462859892 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004966092.1 | 7e-48 | uncharacterized protein LOC101753253 | ||||
Swissprot | Q9M0F8 | 2e-34 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | A0A3L6DFR4 | 4e-48 | A0A3L6DFR4_MAIZE; NAC domain-containing protein 73 | ||||
TrEMBL | C7J3W6 | 5e-49 | C7J3W6_ORYSJ; Os06g0560300 protein | ||||
STRING | BRADI1G37900.1 | 1e-48 | (Brachypodium distachyon) | ||||
STRING | MLOC_72553.1 | 5e-48 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1453 | 38 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 3e-36 | NAC domain containing protein 75 |
Publications ? help Back to Top | |||
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