PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462859543
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 89aa    MW: 10082.6 Da    PI: 9.7002
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462859543genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.8e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEde l  +++++G   +W + +++ g++R++k+c++rw++yl
        462859543 14 RGPWSPEEDEALRSYIQRHGIAgNWIALPKKAGLKRCGKSCRLRWLNYL 62
                     89******************889*************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-22565IPR009057Homeodomain-like
PROSITE profilePS5129419.924966IPR017930Myb domain
SMARTSM007173.8E-111364IPR001005SANT/Myb domain
PfamPF002491.1E-141462IPR001005SANT/Myb domain
SuperFamilySSF466895.64E-201588IPR009057Homeodomain-like
CDDcd001671.93E-91662No hitNo description
PROSITE profilePS500904.0196389IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.0E-76689IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MGRTPCCDRA AVKRGPWSPE EDEALRSYIQ RHGIAGNWIA LPKKAGLKRC GKSCRLRWLN  60
YLRPDIRHGG FTDEEDAVIL ALYNQLGSK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions as regulator of genes affecting cell wall organization and remodeling. Activates genes related to the primary cell wall and represses genes related to the secondary cell wall and expansins. Required for the regulation of longitudinal cell growth in stems, leaves, petioles, roots, flowers and siliques. {ECO:0000269|PubMed:24563287}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462859543
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794161e-101HF679416.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB10 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455023.12e-56transcription factor RAX2
SwissprotF4JSU02e-47MYB87_ARATH; Transcription factor MYB87
TrEMBLC5XLY85e-55C5XLY8_SORBI; Uncharacterized protein
TrEMBLQ8S3Z04e-55Q8S3Z0_SORBI; Typical P-type R2R3 Myb protein (Fragment)
STRINGSb03g003120.18e-56(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.11e-49myb domain protein 87
Publications ? help Back to Top
  1. Fujiwara S, et al.
    Chimeric repressor analysis identifies MYB87 as a possible regulator of morphogenesis via cell wall organization and remodeling in Arabidopsis.
    Biotechnol. Lett., 2014. 36(5): p. 1049-57
    [PMID:24563287]