PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462859354
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 246aa    MW: 27504.6 Da    PI: 10.1375
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462859354genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM98.31.1e-3027954128
        NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                +ekewyf++ +d ky+tg r nratk+gyWkat kd+e+++    +  l g+kktLvfykgrapkg+kt+Wvmheyrl
  462859354   2 GEKEWYFYCLKDCKYPTGLRGNRATKAGYWKATSKDREIYDGassEPVLLGMKKTLVFYKGRAPKGVKTNWVMHEYRL 79 
                579*************************************9744344449**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100537.9971116IPR003441NAC domain
SuperFamilySSF1019416.02E-352116IPR003441NAC domain
PfamPF023653.6E-14679IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGEKEWYFYC LKDCKYPTGL RGNRATKAGY WKATSKDREI YDGASSEPVL LGMKKTLVFY  60
KGRAPKGVKT NWVMHEYRLD NKERVPYSAT SSNTKSKKPC SSSKVEEWVV CRVFDKSLGT  120
RKEPESAPVS APPYHTAMSG GGVDPRSMSF PMPTEFALMR ENKQTLEKSI REIERKRQGL  180
QAQEKKLITE IKKVAKLGQM LVKAPATAVA KPTAGGKVSA QAEAADWVDG GIDDDLQARL  240
DNLRKM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-28112268171NO APICAL MERISTEM PROTEIN
1ut4_B1e-28112268171NO APICAL MERISTEM PROTEIN
1ut7_A1e-28112268171NO APICAL MERISTEM PROTEIN
1ut7_B1e-28112268171NO APICAL MERISTEM PROTEIN
4dul_A1e-28112268171NAC domain-containing protein 19
4dul_B1e-28112268171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462859354
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801540.15e-55NAC domain-containing protein 79-like
SwissprotQ9FLJ28e-45NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A368R2721e-54A0A368R272_SETIT; Uncharacterized protein
STRINGPavir.Bb02033.1.p5e-53(Panicum virgatum)
STRINGSi002074m7e-53(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145237121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.14e-47NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]