PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462859342 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 177aa MW: 18819.6 Da PI: 10.3148 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 25 | 5.2e-08 | 22 | 50 | 1 | 29 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkle 29 lppGfrFhP de+l+ +yL +k++ ++ + 462859342 22 LPPGFRFHPMDEDLLGYYLFRKATPSTRS 50 79*******************99877644 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.84E-7 | 21 | 47 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-5 | 23 | 57 | IPR003441 | NAC domain |
SMART | SM00414 | 2.1E-34 | 44 | 147 | IPR002119 | Histone H2A |
SuperFamily | SSF47113 | 3.0E-19 | 64 | 144 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 4.3E-33 | 66 | 145 | IPR009072 | Histone-fold |
PRINTS | PR00620 | 1.6E-24 | 69 | 84 | IPR002119 | Histone H2A |
PRINTS | PR00620 | 1.6E-24 | 84 | 97 | IPR002119 | Histone H2A |
PRINTS | PR00620 | 1.6E-24 | 110 | 122 | IPR002119 | Histone H2A |
Pfam | PF16211 | 9.4E-17 | 116 | 148 | IPR032454 | Histone H2A, C-terminal domain |
PRINTS | PR00620 | 1.6E-24 | 124 | 142 | IPR002119 | Histone H2A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MERFGLGGTI GLDLGGIGGG DLPPGFRFHP MDEDLLGYYL FRKATPSTRS TSTSASHGSS 60 RLRDWHAQRV GTSAPVYLAA ILDYLAAELA GNAARDNKKN RMQIPRHVLV AIPNDEELGR 120 LLVGVTIAHG GVLPNINPVL LPKKATERAG AKSPKKVKVA TKSPQGVDSP TCRISAD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2nqb_C | 3e-32 | 66 | 149 | 38 | 123 | Histone H2A |
2nqb_G | 3e-32 | 66 | 149 | 38 | 123 | Histone H2A |
4qlc_C | 3e-32 | 66 | 149 | 38 | 123 | Histone H2A |
4qlc_G | 3e-32 | 66 | 149 | 38 | 123 | Histone H2A |
6dzt_C | 3e-32 | 66 | 149 | 39 | 124 | Histone H2A |
6dzt_G | 3e-32 | 66 | 149 | 39 | 124 | Histone H2A |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462859342 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023877105.1 | 3e-43 | histone H2A | ||||
Refseq | XP_023919571.1 | 3e-43 | histone H2A | ||||
Swissprot | Q1S053 | 4e-42 | H2A3_MEDTR; Probable histone H2A.3 | ||||
TrEMBL | A0A2R6PPY2 | 3e-42 | A0A2R6PPY2_ACTCH; Histone H2A | ||||
STRING | XP_008223128.1 | 2e-42 | (Prunus mume) | ||||
STRING | Gorai.004G004000.1 | 2e-42 | (Gossypium raimondii) | ||||
STRING | XP_004165280.1 | 3e-42 | (Cucumis sativus) | ||||
STRING | EMJ07281 | 2e-42 | (Prunus persica) |