PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462858826
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family CPP
Protein Properties Length: 467aa    MW: 50382.8 Da    PI: 6.7541
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462858826genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR22.42.4e-0751751641
        TCR 16 kYCeCfaagkkCseeCkCedCkNkee 41
                YCeCfaa+++C+  C+C++C N+ e
  462858826 51 TYCECFAAQVYCDG-CNCSNCGNNIE 75
               6*************.********865 PP
2TCR49.86.6e-16121160140
        TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                k++kgC+Ckks ClkkYCeC++a++ Cs++C+C dCkN e
  462858826 121 KHNKGCHCKKSGCLKKYCECYQANVLCSKNCRCMDCKNFE 160
                589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163429.71342161IPR005172CRC domain
PfamPF036387.8E-55173IPR005172CRC domain
SMARTSM011140.0435276IPR033467Tesmin/TSO1-like CXC domain
SMARTSM011142.0E-18121162IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.8E-12124159IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MEQGRNQQQP NQAAPAVGGE MKEPAAAAQQ QRPAAPGIPA ARPWPVVFTP TYCECFAAQV  60
YCDGCNCSNC GNNIESENLR KEAIETLLAR NPLAFQPKIE NGPSTHNVRK DNSGAIPLVP  120
KHNKGCHCKK SGCLKKYCEC YQANVLCSKN CRCMDCKNFE GSDERKASIQ VEYASDRNHI  180
KQGASIIHNS TTGTSGYNYS PMRRKRTYED ALGGKLNTAG VMLEAQFRQG NPADASLLPP  240
PSTGCDGHVA THSPSKSFNP SYRSPLANTI HLSEVKDMVK QMVTACKTEA ETYTAVADNK  300
VDETGGGKEL HTNDGLSNGH CNQQDSKEAQ TLACNEPNVK DSRPASPATQ ALMCNEQDTT  360
FGDDYRSSFP SISCDQDISE INVAQENLVL TGIRDYLRVI ITRGKINEHK SSSEAAIELG  420
AQLDHGATPS ISPSKAEEND TSSNGTKTLR SNQQSISNDG SKGNNGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-225217125133Protein lin-54 homolog
5fd3_B2e-225217125133Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462858826
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798802.10.0protein tesmin/TSO1-like CXC 5
TrEMBLA0A2T7F4C20.0A0A2T7F4C2_9POAL; Uncharacterized protein
STRINGPavir.Ab00979.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57552653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.18e-64Tesmin/TSO1-like CXC domain-containing protein