PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462858763

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

GRAS

Protein Properties

Length: 616aa MW: 69900.3 Da PI: 7.2003

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462858763	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	357.8	1.6e-109	248	610	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 ++lL++cA+ v+++d + a++lL++++++asp+gd qRla++f+++L+arla+++s++yk+ ++++ + ++ l+a++l+ ++P+ k+sh+ aNq+ 462858763 248 ETLLIHCAQSVATDDRRSATELLKQIRHHASPNGDGDQRLAHCFANGLEARLAGTGSQIYKSYTMTRFA---CTDLLKAYQLYLAACPFKKISHFFANQT 344 789**********************************************************999999...9*********************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199 I++ave++++vHi+ f+i + +Q L++Rp+gpp+lRiT ++ p++g + ++eetg+ L+++A++++vpfef++ +a+r+e++++e+L+++++ 462858763 345 IVNAVEKAKKVHIVNFGIYYSFQ-------LSTRPAGPPRLRITEIDTPQPGfrPTARIEETGRYLKDYAHTFNVPFEFQA-IASRFEAVQIEDLHIEKD 436 ******************9.......99*****************9***********************.7************* PP GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299 E l+Vn++++ ++l+desv es+r+ vL+++++++P+v+++ + ++n++ F+ rf eal +ysa+fd+le+++pr++e+r +E +l+gre+ nv++ 462858763 437 ELLIVNCMFKFKTLMDESVVAESPRNMVLNTIRKMNPHVFIHGIINGSYNAPFFVSRFREALFHYSAIFDMLETNIPRDNEQRLLIESALFGREAINVIS 536 ************************************************************************************************ PP GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ceg er er et+++W+ r ++aGFk++p++++++k a+ +r++++d + ++e++ +l++gWk+r L+++S W+ 462858763 537 CEGLERLERPETYKQWQVRNQRAGFKQLPVNQDIMKRAREKVRNYHKD-FIIDEDNRWLLQGWKGRILMALSTWK 610 ******************************************77.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	58.372	221	591	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.4E-107	248	610	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 616 aa Download sequence Send to blast
MPALDFPSAP FLQPPQLYRD PSPDSSVVET GEAWPYDPTE VYQLQTNPVP QTLLSQSSSF 60 ASSNGSGITV SDSFESLLSS PGFMPDVGFT EFAVQSQQAM QFCRGFEEAS RFLPDESKLV 120 IDLEKPTSVP SLPRSVEEEK KIVEVKTEKA DVEAGTHRGR KHFYGDDLDA EEGRCTKHSA 180 PAIDTDHLVR EMMDKVLLCN GEMCSKGVKE LREALQNEKH PHGGHGRGSG HGKGRGKKQP 240 KKEVVDLETL LIHCAQSVAT DDRRSATELL KQIRHHASPN GDGDQRLAHC FANGLEARLA 300 GTGSQIYKSY TMTRFACTDL LKAYQLYLAA CPFKKISHFF ANQTIVNAVE KAKKVHIVNF 360 GIYYSFQLST RPAGPPRLRI TEIDTPQPGF RPTARIEETG RYLKDYAHTF NVPFEFQAIA 420 SRFEAVQIED LHIEKDELLI VNCMFKFKTL MDESVVAESP RNMVLNTIRK MNPHVFIHGI 480 INGSYNAPFF VSRFREALFH YSAIFDMLET NIPRDNEQRL LIESALFGRE AINVISCEGL 540 ERLERPETYK QWQVRNQRAG FKQLPVNQDI MKRAREKVRN YHKDFIIDED NRWLLQGWKG 600 RILMALSTWK PDHRSS

Sequence ? help Back to Top

Protein Sequence Length: 616 aa Download sequence Send to blast

MPALDFPSAP FLQPPQLYRD PSPDSSVVET GEAWPYDPTE VYQLQTNPVP QTLLSQSSSF  60
ASSNGSGITV SDSFESLLSS PGFMPDVGFT EFAVQSQQAM QFCRGFEEAS RFLPDESKLV  120
IDLEKPTSVP SLPRSVEEEK KIVEVKTEKA DVEAGTHRGR KHFYGDDLDA EEGRCTKHSA  180
PAIDTDHLVR EMMDKVLLCN GEMCSKGVKE LREALQNEKH PHGGHGRGSG HGKGRGKKQP  240
KKEVVDLETL LIHCAQSVAT DDRRSATELL KQIRHHASPN GDGDQRLAHC FANGLEARLA  300
GTGSQIYKSY TMTRFACTDL LKAYQLYLAA CPFKKISHFF ANQTIVNAVE KAKKVHIVNF  360
GIYYSFQLST RPAGPPRLRI TEIDTPQPGF RPTARIEETG RYLKDYAHTF NVPFEFQAIA  420
SRFEAVQIED LHIEKDELLI VNCMFKFKTL MDESVVAESP RNMVLNTIRK MNPHVFIHGI  480
INGSYNAPFF VSRFREALFH YSAIFDMLET NIPRDNEQRL LIESALFGRE AINVISCEGL  540
ERLERPETYK QWQVRNQRAG FKQLPVNQDI MKRAREKVRN YHKDFIIDED NRWLLQGWKG  600
RILMALSTWK PDHRSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-51	251	610	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462858763

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004970541.1	0.0	scarecrow-like protein 9
Swissprot	O80933	1e-172	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A1E5VF22	0.0	A0A1E5VF22_9POAL; Scarecrow-like protein 9
STRING	Pavir.Eb03680.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12518	31	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-174	GRAS family protein