PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462858582 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 227aa MW: 26129.9 Da PI: 8.8585 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.9 | 8.7e-21 | 5 | 41 | 15 | 51 |
HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kRr g+lKKA+E+SvLCdaev +iifs++gklyey++ 462858582 5 KRRSGLLKKAHEISVLCDAEVGLIIFSTKGKLYEYAT 41 9**********************************86 PP | |||||||
2 | K-box | 105.2 | 8.2e-35 | 60 | 155 | 4 | 99 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + s+e++++ ++++e++kLk+++e++q+ q+hl+Ge+Le+L+lkeLqqLeqqLe+slk+iRs+K++l+le+i+elq+ke++lqeenk L+k+l 462858582 60 KVLISAESETQGNWCHEYRKLKAKVETIQKCQKHLMGEELETLNLKELQQLEQQLESSLKHIRSRKSQLMLESISELQRKERSLQEENKVLQKELT 155 555667888999********************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.7E-15 | 1 | 42 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 19.582 | 1 | 43 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.45E-22 | 5 | 71 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.6E-18 | 5 | 20 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.0E-16 | 5 | 39 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.6E-18 | 20 | 41 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.6E-29 | 66 | 154 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 17.629 | 70 | 160 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MGRGKRRSGL LKKAHEISVL CDAEVGLIIF STKGKLYEYA TDHCMDKILE RYERYSYAEK 60 VLISAESETQ GNWCHEYRKL KAKVETIQKC QKHLMGEELE TLNLKELQQL EQQLESSLKH 120 IRSRKSQLML ESISELQRKE RSLQEENKVL QKELTEKQKA HRQQVQLEHT QQPQTSSSSS 180 PFMMREAPPA VNVSNYPAAT GVRVDGPAEQ PQVRIGLPPW MLSHLSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 3e-17 | 75 | 156 | 22 | 103 | Developmental protein SEPALLATA 3 |
4ox0_B | 3e-17 | 75 | 156 | 22 | 103 | Developmental protein SEPALLATA 3 |
4ox0_C | 3e-17 | 75 | 156 | 22 | 103 | Developmental protein SEPALLATA 3 |
4ox0_D | 3e-17 | 75 | 156 | 22 | 103 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. May be involved in the control of flowering time. {ECO:0000269|Ref.9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462858582 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ792971 | 0.0 | DQ792971.1 Eragrostis pilosa fruitful-like MADS-box transcription factor (FUL1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004981740.1 | 1e-122 | MADS-box transcription factor 14 isoform X1 | ||||
Swissprot | Q10CQ1 | 1e-116 | MAD14_ORYSJ; MADS-box transcription factor 14 | ||||
TrEMBL | A0A0A9QQM8 | 1e-133 | A0A0A9QQM8_ARUDO; Uncharacterized protein | ||||
STRING | BRADI1G08340.1 | 1e-114 | (Brachypodium distachyon) | ||||
STRING | Pavir.Ia00530.1.p | 1e-114 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1151 | 37 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 7e-60 | MIKC_MADS family protein |