PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462857966

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

HSF

Protein Properties

Length: 208aa MW: 23449.8 Da PI: 6.9258

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462857966	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	102.2	4.5e-32	23	114	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 F+ k++++++d++++ +++w +n+f+vld+ f++ +Lp+yFkh+nfaSFvRQLn+YgF+kv++++ weF+h+ F +g+++ll i 462857966 23 FVAKTFHMVSDPATDAVVRWGVASNTFLVLDPAAFSEYLLPSYFKHRNFASFVRQLNTYGFRKVDTDR---------WEFAHQLFLRGQTQLLPLIV 110 9******************999**************************************99.........****************** PP XXXX CS HSF_DNA-bind 99 rkks 102 rkk+ 462857966 111 RKKK 114 *986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.7E-35	15	106	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	2.7E-43	19	112	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.24E-29	21	112	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	6.2E-17	23	46	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	4.4E-28	23	112	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.2E-17	61	73	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	62	86	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.2E-17	74	86	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006970	Biological Process	response to osmotic stress
GO:0009737	Biological Process	response to abscisic acid
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MGSECKGQLL QLHAAEQQQE QPFVAKTFHM VSDPATDAVV RWGVASNTFL VLDPAAFSEY 60 LLPSYFKHRN FASFVRQLNT YGFRKVDTDR WEFAHQLFLR GQTQLLPLIV RKKKPGCRDL 120 CEEGEEVRGT IRAVQRLREE QRGMEEELQA MDQRLQAAES RPGQMLAFLA KLADEPGVVL 180 RAMLGKKEEL AAAGGGMIKG SEEQTCYG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-25	14	112	20	129	Heat shock factor protein 1
5d5v_B	2e-25	14	112	20	129	Heat shock factor protein 1
5d5v_D	2e-25	14	112	20	129	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00379	DAP	Transfer from AT3G24520	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462857966

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU954042	1e-160	EU954042.1 Zea mays clone 1452946 heat shock factor protein HSF30 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633152.1	1e-112	heat stress transcription factor C-1b
Swissprot	Q942D6	1e-113	HFC1B_ORYSJ; Heat stress transcription factor C-1b
TrEMBL	A0A0E0N234	1e-110	A0A0E0N234_ORYRU; Uncharacterized protein
STRING	ORUFI01G33030.1	1e-111	(Oryza rufipogon)
STRING	OS01T0733200-01	1e-111	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11298	31	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24520.1	3e-60	heat shock transcription factor C1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Schmidt R, et al. Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica. AoB Plants, 2012. 2012: p. pls011 [PMID:22616023]