PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462857692

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NAC

Protein Properties

Length: 317aa MW: 35201.2 Da PI: 6.5209

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462857692	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	157	7.8e-49	16	142	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelv 100 pGfrFhPt+eel+ +yL + v+gkkl++ ++i +++iy+++PwdLp ++k +e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+d++v s+ ++ + 462857692 16 PGFRFHPTEEELLEFYLSHVVHGKKLHF-DIIGTLNIYRHDPWDLPGMAKIGEREWYFFVPRDRKAGSGGRPNRTTERGFWKATGSDRAVRSSgdAKRII 114 9***********************99.99***********888999*************************************9666677 PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 glkktLvfykgrap+g+ktdWvm+eyrl 462857692 115 GLKKTLVFYKGRAPRGTKTDWVMNEYRL 142 **************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-54	10	151	IPR003441	NAC domain
PROSITE profile	PS51005	50.276	14	185	IPR003441	NAC domain
Pfam	PF02365	5.9E-25	16	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MAMGAASGME VEQDLPGFRF HPTEEELLEF YLSHVVHGKK LHFDIIGTLN IYRHDPWDLP 60 GMAKIGEREW YFFVPRDRKA GSGGRPNRTT ERGFWKATGS DRAVRSSGDA KRIIGLKKTL 120 VFYKGRAPRG TKTDWVMNEY RLPDKNNNNN NNNNASSSSS SSSSSSSPKD QDMELEQRAC 180 ETEERQRRSN LDYMARASLV RVDDYLSPDD SFLIPSSSSS APSEDSNNAP VGAKTEADAA 240 TVTVAATSLP PLQHVTATPA ALSLPPSMQL PAVRHGDLPS LQVPANHGVF DWMQDSFQLR 300 SPWQDQLFLS PLANLLY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-48	1	142	1	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462857692

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107090	1e-146	AK107090.1 Oryza sativa Japonica Group cDNA clone:002-121-G12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004985821.1	1e-142	NAC domain-containing protein 35
Swissprot	Q10S65	1e-119	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A1E5VQ14	1e-142	A0A1E5VQ14_9POAL; NAC domain-containing protein 35
STRING	Si036757m	1e-141	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1770	38	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	5e-73	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]