PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462857632

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

C2H2

Protein Properties

Length: 280aa MW: 29470.1 Da PI: 6.4167

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462857632	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.00031	168	192	1	23
EEETTTT..EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg..ksFsrksnLkrHirtH 23 y C+ Cg k+F +L++H+r + 462857632 168 YACERCGgkKRFAVLADLRSHLRHC 192 89********************987 PP
2	zf-C2H2	11	0.0013	202	217	6	21
TTEEESSHHHHHHHHH CS zf-C2H2 6 CgksFsrksnLkrHir 21 Cg++Fsrk+ L Hi+ 462857632 202 CGTTFSRKDKLFGHIS 217 **************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MPGGAPSDAL VSGGGAGGGD GDPRVALLRL AALGDHMAAV RGRIAASLSG EAQPLSAADI 60 HSVSSEISSA ARLVVLNAAS LLASSVPFSA PSPPAPPPAC APAPAPAPVQ ELPAAAVSAQ 120 ERPPTVTKGD GDYDVGCNRN RAHRRFRPLK SAVCTRNHFR RSHCPKLYAC ERCGGKKRFA 180 VLADLRSHLR HCGEEAQWRC SCGTTFSRKD KLFGHISLFE GHTPALAGPN KEMVAEPTEA 240 FPEPMEEVGV EGNGDREEDE EGGYDPEFFK EWMEELRGGG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462857632

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006648771.1	1e-104	PREDICTED: protein indeterminate-domain 13-like
TrEMBL	A0A3L6RPS7	1e-116	A0A3L6RPS7_PANMI; Zinc finger protein STAR3-like
STRING	OS02T0572900-01	1e-103	(Oryza sativa)
STRING	ONIVA02G23610.1	1e-103	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12550	32	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.3	3e-38	C2H2 family protein