PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462857429 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | TALE | ||||||||
Protein Properties | Length: 255aa MW: 27808.3 Da PI: 6.0509 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.3 | 1.5e-09 | 187 | 220 | 22 | 55 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp++e++ +LA+ +gL+ +q+ +WF N+R ++ 462857429 187 WPYPTEEDKVRLAAMTGLDPKQINNWFINQRKRH 220 59*****************************885 PP | |||||||
2 | ELK | 31.1 | 5.3e-11 | 140 | 161 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Ll+KYsg+L+ L++ F+ 462857429 140 ELKEMLLKKYSGCLSRLRSDFL 161 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 7.5E-16 | 22 | 66 | IPR005540 | KNOX1 |
Pfam | PF03790 | 5.9E-19 | 26 | 63 | IPR005540 | KNOX1 |
PROSITE profile | PS51213 | 9.725 | 140 | 160 | IPR005539 | ELK domain |
SMART | SM01188 | 1.1E-5 | 140 | 161 | IPR005539 | ELK domain |
Pfam | PF03789 | 2.7E-8 | 140 | 161 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.681 | 160 | 223 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.56E-20 | 162 | 232 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.5E-14 | 162 | 227 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-27 | 165 | 225 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.50E-13 | 172 | 224 | No hit | No description |
Pfam | PF05920 | 3.9E-17 | 180 | 219 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 198 | 221 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MEDLYSIHPG ISRAGGGAAA TSDRGAQIAG HPRYPTLLSA YIECRKVGAP PEVAALLEEI 60 GRERCAAASA AGEVGLDPEL DEFMAASFLS SVRTQLTSLC GGAASLSDEM VGSSEDEPCS 120 GDTDATDLGQ EHSSRLADRE LKEMLLKKYS GCLSRLRSDF LKKRKKGKLP KDARSALMDW 180 WNTHYRWPYP TEEDKVRLAA MTGLDPKQIN NWFINQRKRH WKPSEDMRFA LMEGVTGGGS 240 SSGTTLYFDT GTIGP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 155 | 164 | LRSDFLKKRK |
2 | 161 | 165 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462857429 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001105084.1 | 1e-150 | liguleless 4 | ||||
Swissprot | Q9FP29 | 1e-127 | KNOS1_ORYSJ; Homeobox protein knotted-1-like 1 | ||||
TrEMBL | A0A0A9BTH0 | 1e-152 | A0A0A9BTH0_ARUDO; Uncharacterized protein | ||||
STRING | GRMZM2G094241_P01 | 1e-149 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1698 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23380.1 | 6e-69 | KNOTTED1-like homeobox gene 6 |
Publications ? help Back to Top | |||
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