PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462857387 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | AP2 | ||||||||
Protein Properties | Length: 64aa MW: 7410.48 Da PI: 10.2874 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.8 | 4.8e-12 | 25 | 64 | 1 | 44 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAak 44 s+y+GV+ +k grW+A+ + +k+++lg f+t+eeAa+ 462857387 25 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAAR 64 89********.7******5553..2.26**************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.12E-11 | 25 | 64 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.8E-8 | 25 | 64 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.42E-15 | 25 | 64 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.6E-8 | 26 | 64 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-5 | 26 | 64 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 11.351 | 26 | 64 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 64 aa Download sequence Send to blast |
MGNLSKEEFV HVLRRQSTGF PRGSSKYRGV TLHKCGRWEA RMGQFLGKKY VYLGLFDTEE 60 EAAR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (PubMed:22408071). Involved in spikelet transition and development (Probable) (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457, PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269|PubMed:22408071, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. | |||||
UniProt | Transcription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269|PubMed:22408071}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462857387 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development (Probable). Induced by SH5 in spikelets abscission zones (AZ). Triggered by cold stress (PubMed:24923192). {ECO:0000269|PubMed:24923192, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT056188 | 6e-96 | BT056188.1 Zea mays full-length cDNA clone ZM_BFb0070P06 mRNA, complete cds. | |||
GenBank | BT060890 | 6e-96 | BT060890.1 Zea mays full-length cDNA clone ZM_BFb0066G16 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004977036.1 | 5e-39 | AP2-like ethylene-responsive transcription factor TOE3 isoform X2 | ||||
Refseq | XP_022568078.1 | 5e-39 | floral homeotic protein APETALA 2-like isoform X2 | ||||
Swissprot | A0A0N7KJT8 | 5e-38 | APL25_ORYSJ; APETALA2-like protein 5 | ||||
Swissprot | B8AVJ9 | 5e-38 | APL25_ORYSI; APETALA2-like protein 5 | ||||
TrEMBL | A0A0A9KHY8 | 5e-39 | A0A0A9KHY8_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.J06508.1.p | 5e-39 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5514 | 36 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 3e-40 | AP2 family protein |
Publications ? help Back to Top | |||
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