PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462856573 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 350aa MW: 37332.6 Da PI: 5.8732 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 119.4 | 1.4e-37 | 124 | 183 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+alkcprC+s+ntkfCyynnys+sqPr+fCkaCrryWt+GG+lrnv vGgg+rk k+ss 462856573 124 EEALKCPRCESSNTKFCYYNNYSVSQPRFFCKACRRYWTQGGSLRNVSVGGGSRKYKRSS 183 6899***************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-21 | 121 | 170 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.1E-32 | 125 | 181 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.643 | 127 | 181 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 129 | 165 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 350 aa Download sequence Send to blast |
MARLGAGLAR AAARDGCDDV GGPQLLPRRR APHPTPHRDD VAWVGRGGGA GAERDEGGRG 60 DLDDDCLLPR GREDADMVFR WRFRFLGHDA IGTAAPVEEA RKARRQQQPM AVGGEERMPR 120 PHLEEALKCP RCESSNTKFC YYNNYSVSQP RFFCKACRRY WTQGGSLRNV SVGGGSRKYK 180 RSSASSSSTP PSSSSVTEVI NNQNLVPASL TGFPNVLPTF MSTSSFEIPH FSLPIAPTLS 240 LSGLAPTPML APIAATPTTS SFLELLGGSL LDNQGNDFYG PMITDGGNEM EVLPPPSSFD 300 FGVMQQHGVI GAHHDGTPIT GATEGGQWPT ANNGDDGAAG SEGGLEMEEV |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462856573 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G24060.1 | 3e-26 | Dof family protein |