PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462856478
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 340aa    MW: 36038.5 Da    PI: 6.8296
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462856478genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding391.8e-123173246
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     g +T+eE+ ++  +    G++ W+ Ia+ ++ gRt++++k++w++
        462856478 31 GDFTEEEEHIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 73
                     789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.205124IPR017877Myb-like domain
SuperFamilySSF466894.6E-211079IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.5E-121036IPR009057Homeodomain-like
PROSITE profilePS5129421.9242579IPR017930Myb domain
SMARTSM007172.9E-102977IPR001005SANT/Myb domain
PfamPF002494.0E-113173IPR001005SANT/Myb domain
CDDcd001675.04E-73373No hitNo description
Gene3DG3DSA:1.10.10.606.0E-183776IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
CINAFAPGLK RCGKSCRLRW LNYLRPNIKH GDFTEEEEHI ICSLYISIGS RWSIIAAQLP  60
GRTDNDIKNY WNTKLKKKLL GKRAPSRRAR ANNLQDPYQL HSTAAAGGNN MCSTSNNGGS  120
AMASQALSAS ALERIQLHMR LQGLYGAFGC ATDVSVGAAS AATPWPKLET LLASSKILPA  180
TEPVDAVATT VTVHQPAQHV VDQGLATTGP EAVEADQLGS TAYMPCSFER PNKLGFCSPV  240
ATESDVASSL MVNGGYGAGG FAPHHDELYD FLYNKYGSVG AGAHIPSLPE LQCPDGAAIV  300
GADEKFSAWA TSACEYGVAG QIQGNSVGSL HDYALGGYDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-19117940108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462856478
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040571e-51AP004057.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1316_E06.
GenBankAP0149581e-51AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792029.11e-128transcription factor CSA-like
TrEMBLA0A3L6EKP81e-128A0A3L6EKP8_MAIZE; Transcription factor MYB36
STRINGPavir.Ab03119.1.p1e-129(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-50myb domain protein 36