PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462855989 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | DBB | ||||||||
Protein Properties | Length: 254aa MW: 27647 Da PI: 5.1763 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 25.6 | 2.5e-08 | 4 | 42 | 5 | 37 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+e+ ++ fC +++ lC+ C H+ H 462855989 4 LCDECAAAAATVFCSNDEAALCDACDRRVHRAnklagkH 42 7******99*******************9*766666666 PP | |||||||
2 | zf-B_box | 27.9 | 4.7e-09 | 62 | 103 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 +++ C+ +++ + +fC++++ +C++C +++H+ H 462855989 62 KPPLCDICQDRRGLFFCKEDRAIFCRECDVATHNAneltrrH 103 6899*****************************766666666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.968 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 5.5E-10 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.80E-6 | 4 | 47 | No hit | No description |
Pfam | PF00643 | 4.5E-7 | 4 | 43 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 6.7E-15 | 61 | 108 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.054 | 61 | 108 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.1E-7 | 62 | 104 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.54E-7 | 64 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MKLLCDECAA AAATVFCSND EAALCDACDR RVHRANKLAG KHQRFFLLHP APSSSSSSSA 60 QKPPLCDICQ DRRGLFFCKE DRAIFCRECD VATHNANELT RRHSRFLLTG VRVSSEPVDF 120 AAVPEKEVVE VEPENSGSSA RNARASGSDG SSISEYLTKT LPGWHVEDFL VDDADAGVAA 180 CSDGLDQGGK VQIGGLLQEA FPVWAGPEQV LSDVVVTADE QASRERCVPQ MQMQMHPEWT 240 GSKRPRASAP CSYW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462855989 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004976398.1 | 1e-106 | B-box zinc finger protein 20 isoform X2 | ||||
Swissprot | Q9LQZ7 | 4e-49 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A1E5V1M9 | 1e-111 | A0A1E5V1M9_9POAL; B-box zinc finger protein 21 | ||||
STRING | Pavir.Gb01186.1.p | 1e-105 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2392 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39070.1 | 2e-41 | DBB family protein |