PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462855853 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | AP2 | ||||||||
Protein Properties | Length: 305aa MW: 33039.8 Da PI: 6.8812 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 27.7 | 6.6e-09 | 100 | 124 | 1 | 26 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng 26 ++y+GVr+++ +grW+AeIrdp+++g 462855853 100 KKYRGVRYRS-SGRWAAEIRDPRQGG 124 59******99.7*********98743 PP | |||||||
2 | AP2 | 34.9 | 3.7e-11 | 129 | 167 | 14 | 55 |
AP2 14 rWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 rW+AeIrdp+ + +r +lg++ t+e+Aa+a+++ +++++g 462855853 129 RWAAEIRDPR----QgRRAWLGTYCTPEDAARAYDREARRIRG 167 8*******94....25************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.08E-21 | 100 | 175 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.0E-7 | 101 | 123 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.8E-8 | 101 | 167 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.3E-29 | 101 | 181 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.509 | 101 | 175 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-6 | 102 | 113 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-21 | 128 | 175 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.94E-15 | 128 | 176 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.7E-6 | 141 | 157 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
CGSGILAQLT PARVHRRVTA ATLWPAAERK AAADLADDEF EAEFQLFEDG EVEEEEAESP 60 AALSEPGASK PKALSRAGVS VPSASSTNKR RGAAARPGTK KYRGVRYRSS GRWAAEIRDP 120 RQGGGSSWRW AAEIRDPRQG RRAWLGTYCT PEDAARAYDR EARRIRGKSA RLNFPLPQHP 180 PPATIDLNLP AVDSDDHDLH GAAGGHETHD MTTMDIDAGA GNVCHAVEST LMRIKELITQ 240 SQGPQDERLA SVVSELMNGG AIRSEARAAG ALLQYAALIS ECSQRMEQVA ALKRDLDRRE 300 AQLVA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-14 | 100 | 176 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 3e-14 | 100 | 176 | 4 | 64 | ATERF1 |
3gcc_A | 3e-14 | 100 | 176 | 4 | 64 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462855853 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004985472.1 | 9e-75 | ethylene-responsive transcription factor RAP2-12 | ||||
TrEMBL | A0A3L6SIM6 | 5e-76 | A0A3L6SIM6_PANMI; Ethylene-responsive transcription factor RAP2-12-like | ||||
STRING | Pavir.Ia04390.1.p | 8e-74 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13664 | 22 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16750.1 | 2e-11 | ERF family protein |