PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462855272 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | GRAS | ||||||||
Protein Properties | Length: 1353aa MW: 151477 Da PI: 6.1703 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 163.4 | 1.9e-50 | 367 | 546 | 1 | 181 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 l++lL++cA+avs +d + a++lL ++++++sp+gd++qRla+yf+ +L+arla+++s++yk+l +++ts ++e l+a +l+ ++ + ++ N 462855272 367 LRTLLIHCAQAVSMDDRRSATELLVQIKQHSSPRGDANQRLAHYFAVGLEARLAGTGSQVYKSLMTKHTS---VVEFLKACQLYLAACCFEMTAFRFSNM 463 6789***************************************************************999...*************************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181 +I +av g ++vHi+D+++++G+QWp+Ll +++ ++gpp++RiTg++ p++g + ++eetg+rL++ A+++gvpf+f+ + 462855272 464 TICKAVVGRKKVHIVDYGVQYGFQWPSLLAFFSTWEGGPPEVRITGIDLPQPGfrPASRVEETGRRLSNCAHQFGVPFKFHGI 546 ****************************************************9*9**************************96 PP | |||||||
2 | GRAS | 172.2 | 4.1e-53 | 547 | 765 | 140 | 355 |
GRAS 140 pslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvksls 235 +++RiTg++ p++g + ++eetg+rL++ A+ +gvpf+f+ +a +++++++++L+++p+E+l++n+++q +l+de v ++s +rd vL+ +++++ 462855272 547 AEVRITGIDLPQPGfrPASRVEETGRRLSNCAHLFGVPFKFHG-IAAKWDAISVDDLDIDPDEVLIINSIIQFGNLMDEGVYIHSpsPRDVVLNNIQKMR 645 579**********9*9***************************.799*********************************99988889************ PP GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335 P++++++ + +++ + F++rf eal yysa+fd+l+a+ pr++e+r +Ere++gr ++nv+aceg++r r et+++W+ r ++aG++++pl +++k 462855272 646 PDMFILCVVNGSYGVPFFVTRFREALFYYSAMFDMLDATSPRDNEQRLLIEREIIGRYAMNVIACEGFDRADRPETYKQWQVRNHRAGLRQLPLYPDIVK 745 **************************************************************************************************** PP GRAS 336 qaklllrkvksdgyrveees 355 + +++ + + + ++ee+ 462855272 746 ILREKVKNQYHKDFVIDEED 765 *********9888**99884 PP | |||||||
3 | GRAS | 340.9 | 2.3e-104 | 972 | 1343 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 ++lLl+cA+av+++d + a++lL +++++as++gd +qRla +f+e+L+arla+++s+ly++l +++ts +++ l+a+klf ++ + k+++ N 462855272 972 QTLLLHCAQAVATDDRRSAHELLRKIKQHASSSGDGVQRLAYCFAEGLEARLAGTGSQLYQSLMVRRTS---VVDFLKAYKLFMAACCCKKVAFTFSN 1066 689*****************************************************************9...************************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195 ++I +a++g +r+Hi+D+++++G+QWp Ll+ La+R++gpp++RiTg++ p++g + ++eetg++L+k A+e+gvpf+f+ +a + e++++e+L+ 462855272 1067 KTIHDAMAGRTRLHIVDYGLNYGFQWPGLLRGLAAREGGPPEVRITGIDLPQPGfrPAYQIEETGRQLSKCAREFGVPFRFHG-IAAKRETIRPEDLN 1163 *****************************************************99999*************************.69999********* PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291 ++p E+l+V++ + +l+des++ + +rd+vL+ +++++P+v+++ + ++++ F +rf e l ++sa fd l+a++pr+seer+ vEr ++g 462855272 1164 IDPAEVLVVSSLCHFRHLMDESAAPGQlsPRDQVLNNIRKMRPDVFIHGVMNGRYSTTYFPTRFRELLFFFSAQFDLLDATVPRDSEERMLVERDIFG 1261 *********************998777779******************************************************************** PP GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +++ nv+aceg++r+er et+++W++r ++aG++++pls +++k + +++ + + + v+e++ +l+ Wk+r L+++S W 462855272 1262 QAALNVIACEGTDRVERPETYKQWQARNHRAGLRQLPLSPEVVKVVLDKVKNNYHKDFIVDEDQRWLLHRWKGRVLYALSTW 1343 ******************************************************888************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 56.392 | 341 | 764 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.5E-48 | 367 | 546 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-50 | 547 | 765 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 59.84 | 945 | 1324 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.8E-102 | 972 | 1343 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 1353 aa Download sequence Send to blast |
MDTKSEEFQG QGVLLAEPFS PSIFLDLPPT PRPDSNGEDL ASSDDLVLPF ISRMLMEEDI 60 EDEFYYHYPD HPALLQAQQT YAQILSDDAT TSASSDSATT NTDRSGTFTL SPSSCDASFS 120 NATWPYNPVE LSQLLQSTPY PNTGVGLNSF IAGDANRRGS IHENDEATAL CKEDSVGIQS 180 SGFLNGAGKE TDAVITKLAA GAGGRMHGVV TSGQNMVNMD MLNQAFLMGM EEAKKFLPPN 240 NILLMDPEST SREHRPRDSG LFQGIAAGQL KEDEVVDKLL KFQGSVYVRG RKNRRNWDDL 300 EAEMGKNNKM MVPEPEETGD VVDKMIIHGY AMCLEKMKSL SITMGDEAEK NARKGNERQS 360 SYEAVDLRTL LIHCAQAVSM DDRRSATELL VQIKQHSSPR GDANQRLAHY FAVGLEARLA 420 GTGSQVYKSL MTKHTSVVEF LKACQLYLAA CCFEMTAFRF SNMTICKAVV GRKKVHIVDY 480 GVQYGFQWPS LLAFFSTWEG GPPEVRITGI DLPQPGFRPA SRVEETGRRL SNCAHQFGVP 540 FKFHGIAEVR ITGIDLPQPG FRPASRVEET GRRLSNCAHL FGVPFKFHGI AAKWDAISVD 600 DLDIDPDEVL IINSIIQFGN LMDEGVYIHS PSPRDVVLNN IQKMRPDMFI LCVVNGSYGV 660 PFFVTRFREA LFYYSAMFDM LDATSPRDNE QRLLIEREII GRYAMNVIAC EGFDRADRPE 720 TYKQWQVRNH RAGLRQLPLY PDIVKILREK VKNQYHKDFV IDEEDIGENN FFYQYPDHPV 780 LLQAQLPFAQ ILSDATTTSN SSSASPDSPD TDSTFAGGRV SSDSDHSDMA SAGFVKPFSP 840 ANDRDMFTSA FLKGMEEANK FLPTNKLDRG FTMEEAQVDG MFGHGRGRKN KHGGIDDLDV 900 KEHRASKLIM TETEDAAAHQ MYDEMMLHEQ DICMKGVQHL SISTETESAK GSGKKARWRR 960 QTSGSDDVVD LQTLLLHCAQ AVATDDRRSA HELLRKIKQH ASSSGDGVQR LAYCFAEGLE 1020 ARLAGTGSQL YQSLMVRRTS VVDFLKAYKL FMAACCCKKV AFTFSNKTIH DAMAGRTRLH 1080 IVDYGLNYGF QWPGLLRGLA AREGGPPEVR ITGIDLPQPG FRPAYQIEET GRQLSKCARE 1140 FGVPFRFHGI AAKRETIRPE DLNIDPAEVL VVSSLCHFRH LMDESAAPGQ LSPRDQVLNN 1200 IRKMRPDVFI HGVMNGRYST TYFPTRFREL LFFFSAQFDL LDATVPRDSE ERMLVERDIF 1260 GQAALNVIAC EGTDRVERPE TYKQWQARNH RAGLRQLPLS PEVVKVVLDK VKNNYHKDFI 1320 VDEDQRWLLH RWKGRVLYAL STWVAAGDAS SGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-42 | 371 | 1343 | 8 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462855272 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826966.1 | 0.0 | scarecrow-like protein 30 | ||||
TrEMBL | A0A1D6PN07 | 0.0 | A0A1D6PN07_MAIZE; Uncharacterized protein | ||||
STRING | OPUNC11G20010.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-134 | GRAS family protein |