PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462855269 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | GRAS | ||||||||
Protein Properties | Length: 557aa MW: 62108.8 Da PI: 6.5628 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 124 | 1.8e-38 | 208 | 347 | 11 | 153 |
GRAS 11 avssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegee 110 +++++d + a+ lL++++e+asp+gd++qRla +f+++L+arla+++ ++y++l++++ts +e l a+klf ++ + k+++ aN++I +a+ g + 462855269 208 CFTAHDRTSADLLLKQIKEHASPTGDATQRLAYCFAQGLEARLAGTGRQVYRSLSANRTS---IVEFLEAYKLFMSTCCFRKVAFAFANKTIFDAAMGRS 304 6789999***********************************************999998...9************************************ PP GRAS 111 rvHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg 153 ++Hi+D+++ +G+QWp Ll+ L +R++gpp++RiT ++ p++ 462855269 305 KLHILDYGLHYGFQWPELLRLLGARDGGPPEVRITSIDLPQTA 347 *************************************998865 PP | |||||||
2 | GRAS | 137.2 | 1.7e-42 | 358 | 543 | 189 | 373 |
GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286 + ++L+++p+Eal+Vn ++ +l+ e+ ++s +rd vL+ + +++P+v++ + ++ +++Fl rf eal +salfd+l+a++pre++ r ++E 462855269 358 ICAKDLNMEPDEALVVNDLFNFRTLMGENIVIDStsPRDVVLNNITKMKPNVFIQGIVNGSY-GTTFLSRFREALFDHSALFDMLDATMPRENQLRLVIE 456 56789***********************998887779************************9.679********************************** PP GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 r ++g+ + n++aceg++r+er et+++W+ r ++aG++++pl+ +++k a ++++++ + + +ee +++l++gWk+r L++ S W 462855269 457 RDIFGWVALNAIACEGEDRVERGETYKQWQVRNQRAGLRQLPLNREIVKMATDIVKNHYHKNFIIEEGQQWLLQGWKGRILLAHSTW 543 ***********************************************************999************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 37.64 | 172 | 524 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.3E-36 | 208 | 347 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.0E-40 | 358 | 543 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 557 aa Download sequence Send to blast |
MSPPFVFPDL AAAPDVGARV ATSSYIARIC LLMEEEDVHE EHPDYPALLH AQQPFAQILS 60 SASLPDHAAA ADALPTDTID NPDMFTAVFF KGVEEARKFL PADTGCKLVS GGQLKDKSGD 120 KVRRDRHGAG HEELEAQVGR TSKMPNAELE EAGARDLFDE MMLRGYDVCS KVVGGLRVDV 180 DKDDAAKESK KTTRKKNRAR WLTCTLCCFT AHDRTSADLL LKQIKEHASP TGDATQRLAY 240 CFAQGLEARL AGTGRQVYRS LSANRTSIVE FLEAYKLFMS TCCFRKVAFA FANKTIFDAA 300 MGRSKLHILD YGLHYGFQWP ELLRLLGARD GGPPEVRITS IDLPQTATVP ASLVCHSICA 360 KDLNMEPDEA LVVNDLFNFR TLMGENIVID STSPRDVVLN NITKMKPNVF IQGIVNGSYG 420 TTFLSRFREA LFDHSALFDM LDATMPRENQ LRLVIERDIF GWVALNAIAC EGEDRVERGE 480 TYKQWQVRNQ RAGLRQLPLN REIVKMATDI VKNHYHKNFI IEEGQQWLLQ GWKGRILLAH 540 STWVADDSCS GSTKLSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-33 | 202 | 543 | 9 | 374 | GRAS family transcription factor containing protein, expressed |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462855269 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006663691.1 | 0.0 | PREDICTED: scarecrow-like protein 14 | ||||
TrEMBL | A0A3L6PJW3 | 0.0 | A0A3L6PJW3_PANMI; Scarecrow-like protein 14 | ||||
STRING | Pavir.J35282.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-111 | SCARECROW-like 14 |