PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462855135 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB_related | ||||||||
Protein Properties | Length: 229aa MW: 24944.9 Da PI: 4.1384 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.8 | 3.3e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv G +W+++++ g+ R++k+c++rw +yl 462855135 14 KGPWTAEEDQKLVSFLLANGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61 79******************************99************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.6E-20 | 5 | 69 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.083 | 9 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.2E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.73E-15 | 15 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.48E-8 | 16 | 61 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MGRQPCCDKV GLKKGPWTAE EDQKLVSFLL ANGQCCWRAV PKLAGLLRCG KSCRLRWTNY 60 LRPDLKRGLL SEEEERTKPE EEAAAAAVES CAGLGNEAFC ADEVSMARLL DDIVLPCDDE 120 FIGAPPPAPA ACGTSTASRP ESSSSSSSSS FYSGAAAPAS SGDSSSSVVD GEWPDLSQMM 180 MMEWPESMWL DDGVVTGPAS WDFEDPFVTY QRIDLFDHQE PWNSKPELF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462855135 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT083735 | 2e-74 | BT083735.2 Zea mays full-length cDNA clone ZM_BFb0033K01 mRNA, complete cds. | |||
GenBank | BT085521 | 2e-74 | BT085521.2 Zea mays full-length cDNA clone ZM_BFc0028P12 mRNA, complete cds. | |||
GenBank | BT085625 | 2e-74 | BT085625.2 Zea mays full-length cDNA clone ZM_BFc0040A03 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025802264.1 | 3e-71 | transcription factor MYB20-like | ||||
TrEMBL | A0A2S3GZJ9 | 6e-70 | A0A2S3GZJ9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba02149.1.p | 1e-66 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66230.1 | 3e-44 | myb domain protein 20 |