PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462854985

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

FAR1

Protein Properties

Length: 415aa MW: 46027.4 Da PI: 8.1976

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462854985	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	89.8	3.7e-28	62	150	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fY +YA+++GFsvrk++ +ks+++gei +++fvCs+eg+++ +k++ +++++++++ rtgCka+l++++++ ++k+ev+ +e +HnH+l 462854985 62 EFYLNYAQKLGFSVRKEYANKSRKTGEISSSRFVCSREGFKAADKRT-NHSKTPQPNVRTGCKACLVLRRNNdNAKYEVYAFEPQHNHPL 150 6****************************************9999.99*****************99*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-24	62	151	IPR004330	FAR1 DNA binding domain
SuperFamily	SSF81531	7.06E-6	332	371	IPR023184	Ubiquinol-cytochrome C reductase hinge domain
Gene3D	G3DSA:1.10.287.20	6.1E-4	333	373	IPR023184	Ubiquinol-cytochrome C reductase hinge domain

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MSSPAAEPQP AAPPPTACPP VAGDRNAVAV EAVRSIGCFQ TVSEDYTPRL GQEFASNHEA 60 YEFYLNYAQK LGFSVRKEYA NKSRKTGEIS SSRFVCSREG FKAADKRTNH SKTPQPNVRT 120 GCKACLVLRR NNDNAKYEVY AFEPQHNHPL LVPSCANPLQ RKISNIQSSE ADNPNNVTNA 180 ECEESYRVLE QGSVELVKKV EEILQKQTSI DASEAQSDVE DIQVSSSGNA TDNESEQALD 240 HLSNARVKRR KKKGRKGKNH TTSGIKKGLQ NKKTLRPEQR AVQFPMLDAP TQPGNILFQI 300 LPCIMLRSHQ VTANIISRAD EVSDPTALGG TSKDKCVSQW YKYQKCVERI ADDETRQNYS 360 AGCLDQFEQA MQNARCKEQS CVPARAVSGH MADFWNPDGF RTSGGYACTE APWTQ

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MSSPAAEPQP AAPPPTACPP VAGDRNAVAV EAVRSIGCFQ TVSEDYTPRL GQEFASNHEA  60
YEFYLNYAQK LGFSVRKEYA NKSRKTGEIS SSRFVCSREG FKAADKRTNH SKTPQPNVRT  120
GCKACLVLRR NNDNAKYEVY AFEPQHNHPL LVPSCANPLQ RKISNIQSSE ADNPNNVTNA  180
ECEESYRVLE QGSVELVKKV EEILQKQTSI DASEAQSDVE DIQVSSSGNA TDNESEQALD  240
HLSNARVKRR KKKGRKGKNH TTSGIKKGLQ NKKTLRPEQR AVQFPMLDAP TQPGNILFQI  300
LPCIMLRSHQ VTANIISRAD EVSDPTALGG TSKDKCVSQW YKYQKCVERI ADDETRQNYS  360
AGCLDQFEQA MQNARCKEQS CVPARAVSGH MADFWNPDGF RTSGGYACTE APWTQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	247	255	KRRKKKGRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462854985

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004952692.1	3e-68	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A0E0HYL2	8e-85	A0A0E0HYL2_ORYNI; Uncharacterized protein
STRING	ONIVA07G07180.1	1e-85	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17298	3	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	3e-19	FAR1 family protein