PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462854976
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family FAR1
Protein Properties Length: 433aa    MW: 48950.4 Da    PI: 5.1355
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462854976genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR172.87.7e-2390176290
       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 Y++Y++++GFs+rk k+++ + +++i ++++ Cskeg +e ek +  +++ + ++trt+Cka+++ + +++g+w+v++l+++HnH+la
  462854976  90 LYCDYGHRMGFSIRKGKQSYFTGTKRIRTKDYFCSKEGLKEGEKLT--DANFNDPHTRTNCKAMVRFRVNDHGEWKVIRLVSDHNHNLA 176
                7****************************************99988..9999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.0E-2090176IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MSGVEPAAAG ADQGEEEVAP QEDGGVGTGG GEGTAEAQLA VVSGDEVVGR REYGDEGEAE  60
GEAATVQGSK EGTEELLRIV VYSEEAAYKL YCDYGHRMGF SIRKGKQSYF TGTKRIRTKD  120
YFCSKEGLKE GEKLTDANFN DPHTRTNCKA MVRFRVNDHG EWKVIRLVSD HNHNLARPEE  180
RHLLRSARSL IAGRSSSVEA MLYAGYQGCD SEAEFEETWA EMLREFKLQD NKWLKKLYKL  240
KNKWCSALNK CTFDGGVEYE PQCDSMSNIF SGISDKLTSL SALAVAVDKQ TEDWREKEFD  300
EDTRCCQKPP TCIIKHSDIL NHAAKVYTHR IYKLFETDFL DGCGATKFKE LQRSDDNTYQ  360
YRPIAEDNWL NESICQWMKE RFLTCTRGDA YKTGDHALHG TDYRRLPEEE DIKECPHEQA  420
GGCTYMCIQH SHG
Cis-element ? help Back to Top
SourceLink
PlantRegMap462854976
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012704124.11e-108protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1D6HA860.0A0A1D6HA86_MAIZE; Protein FAR1-RELATED SEQUENCE 5
STRINGSi016477m1e-108(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-14FAR1-related sequence 5