PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462854596
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 654aa    MW: 71507.3 Da    PI: 4.4355
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462854596genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.53.9e-51201454129
        NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101
                 +rFhPtdeelv++yLk+kv+g++l++ ++i+evd+ykvePwdLp+  ++++++++wyfFs+ d+k+++  r+nrat++gyWk+tgkd+ev + + + vg
  462854596  20 AVRFHPTDEELVSYYLKRKVHGRPLKV-DAIAEVDLYKVEPWDLPArsRLRSRDSQWYFFSRLDRKHSNRARTNRATADGYWKTTGKDREVRH-GPRIVG 117
                69*************************.99***************4357888999**************************************.999*** PP

        NAM 102 lkktLvfykgrapkgektdWvmheyrle 129
                +kktLvf++grapkge+t+Wvmheyrle
  462854596 118 MKKTLVFHSGRAPKGERTNWVMHEYRLE 145
                **************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.03E-5716165IPR003441NAC domain
PROSITE profilePS5100555.71417165IPR003441NAC domain
PfamPF023655.2E-2720144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
PPWSVHDPRP LLFHPRSAAA VRFHPTDEEL VSYYLKRKVH GRPLKVDAIA EVDLYKVEPW  60
DLPARSRLRS RDSQWYFFSR LDRKHSNRAR TNRATADGYW KTTGKDREVR HGPRIVGMKK  120
TLVFHSGRAP KGERTNWVMH EYRLEGEEAA GIPQDSFVVC RIFQKAGPGP QNGAQYGAPF  180
VEEEWEEDDE NVGLLPLGGD AAADAIAEHK VPGAMEKGYL QMSDLIQGLG DQNGNGTIGL  240
PVSDTSNNSN QSEDVDGSSG DILSDPNLGS NFLQYLEPGE QNSLMFNANM LSNASSGNLF  300
NTSSPSDGFL ELKDFADAAN LEHPLGDDST IWPSDGWAWK TPDSFEAVNG ANNEIPPLPD  360
DQTFQSEELE RLLQSIQEDS HLGSSVIDPP HSSITNPVGA EDDSLMFYDA PFDSTVCDEG  420
FRQFNGLHGS PATNVSGIDM VDDGIPYYDA MDDNLFITDI LGSIQQPAGS NSHAFNGPIL  480
TQEVNNTIYT YSPGQKVLEP NFVVGAPSAR LPEAGSQLNC VVLPDGQATS STTGKRFVKL  540
LDSISAPPAI AAEEFPSNFS KTFAPISGAR PNTFHVSAEV ISIGSLAVAS RPDNWDVQKD  600
QGMELLFTGF EPESRMHCGC NTITTVLRGG FCLFFFSAIM LLVSYEVGLC IYGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-432216520168Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462854596
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820240.10.0NAC domain-containing protein 53-like
TrEMBLA0A2S3I4R10.0A0A2S3I4R1_9POAL; Uncharacterized protein
TrEMBLA0A2T7DAU20.0A0A2T7DAU2_9POAL; Uncharacterized protein
STRINGPavir.Fa00048.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP71073650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-80NAC domain containing protein 2