PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462854452 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB_related | ||||||||
Protein Properties | Length: 95aa MW: 10732.2 Da PI: 9.02 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.1 | 2.7e-10 | 10 | 56 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 r WT+ +l+ +a + + ++ +W+ Iar +g g+++ ++ks++ 462854452 10 RSQWTPKQNKLFEQALAVYDKEtpdRWDNIARAVG-GKSADEVKSYYK 56 679*****************99*************.**********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.298 | 8 | 63 | IPR017884 | SANT domain |
SMART | SM00717 | 3.1E-8 | 9 | 61 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.8E-8 | 10 | 56 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.36E-13 | 11 | 67 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-5 | 12 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.68E-7 | 13 | 58 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 95 aa Download sequence Send to blast |
MASMSMSSAR SQWTPKQNKL FEQALAVYDK ETPDRWDNIA RAVGGKSADE VKSYYKLLEH 60 DVHRIENGQV AFPAYRCPGA GMGAYEADRL KHLKI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-27 | 6 | 95 | 1 | 92 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462854452 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961116.1 | 2e-47 | protein RADIALIS-like 3 | ||||
Swissprot | F4JVB8 | 3e-28 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
TrEMBL | A0A3L6T7C1 | 4e-46 | A0A3L6T7C1_PANMI; Protein RADIALIS-like 3 | ||||
TrEMBL | K3ZB49 | 4e-46 | K3ZB49_SETIT; Uncharacterized protein | ||||
STRING | Si023770m | 7e-47 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 2e-30 | RAD-like 1 |
Publications ? help Back to Top | |||
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