PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462854319

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

GRAS

Protein Properties

Length: 646aa MW: 72445.8 Da PI: 6.4707

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462854319	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	337.4	2.6e-103	252	616	1	365
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 l++ L++cA+av++gdl+ a+++L+++++++sp+gd++qR+a++f+e+L+arla+++s +y++l +++ts +++ l+a++lf ++ + k +h + 462854319 252 LRTMLIHCAQAVATGDLRSANEMLKQIKQHSSPRGDATQRMAHCFAEGLEARLAGTGSLVYQSLVSKRTS---VVDFLKAYQLFMAATCFKKAQHTFSSR 348 5789***********************************************************99999...*********************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 +Il+av+g +++Hi+ +++++G+QWp+Ll+ La R++gpp++R Tg++ p++g + +le+tgerL++ A++++vpf+f++ +a+++e+++ ++L+++p 462854319 349 TILDAVAGRSKLHIVEYGVQHGFQWPTLLHFLAGREGGPPEVRFTGIDLPQPGfrPAYQLEKTGERLSNCARQFRVPFKFHA-IATKWETVTAQDLNIDP 447 ************************************************9999**********************.7************ PP GRAS 199 gEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 +E+l+Vn+ +l+desv ++s +rd vL+ +++++P+v+v++ + +++ Fl+rf eal +ysa fd+l+a++pr+++ r +E+ l+gr++ n 462854319 448 DEVLVVNCECFFDKLMDESVLVDSpsPRDVVLRNIRNMRPNVFVHSVVNGTFGAPFFLTRFREALFFYSAHFDMLDATIPRDNDVRLLIEQDLIGRSALN 547 ***************98887779********************************************************************* PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365 v+acega+r+ r et+++W+ r ++aG++++pls ++++ ++ +r+++ + + ++e++ +l++gWk+r 462854319 548 VIACEGADRVDRPETYKQWQVRNNRAGLRQLPLSPEVVNLVRGKVRNYYHKDFLLDEDHRWLLQGWKGR 616 *********************************************889*************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.298	226	605	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.0E-101	252	616	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 646 aa Download sequence Send to blast
MGVGLDDFGA DDLSAVLLPA QDGATPGFQQ SPLPVNSDGA SFAGEAVQSS VYLGGAKEEQ 60 DGTKANITTL SSVDEDHGAL ASAFFGGHRG VNMDMLNRAF AQGMEEAKKF LPANNALFID 120 LEAPITGERL STDSKPKGGL MTRQVKEEET VADEMPTMFR ESSNGRGRKN RHHDEDLEAE 180 TGRSSKQMMQ EEQEETGAQE MYREIMSCSY EEFVKRMEDL RVAMDSESEK TSRRGSRKGA 240 RGRQLADEVV DLRTMLIHCA QAVATGDLRS ANEMLKQIKQ HSSPRGDATQ RMAHCFAEGL 300 EARLAGTGSL VYQSLVSKRT SVVDFLKAYQ LFMAATCFKK AQHTFSSRTI LDAVAGRSKL 360 HIVEYGVQHG FQWPTLLHFL AGREGGPPEV RFTGIDLPQP GFRPAYQLEK TGERLSNCAR 420 QFRVPFKFHA IATKWETVTA QDLNIDPDEV LVVNCECFFD KLMDESVLVD SPSPRDVVLR 480 NIRNMRPNVF VHSVVNGTFG APFFLTRFRE ALFFYSAHFD MLDATIPRDN DVRLLIEQDL 540 IGRSALNVIA CEGADRVDRP ETYKQWQVRN NRAGLRQLPL SPEVVNLVRG KVRNYYHKDF 600 LLDEDHRWLL QGWKGRICST KNFVPREREK NLTVHPFAIC SNDRSQ

Sequence ? help Back to Top

Protein Sequence Length: 646 aa Download sequence Send to blast

MGVGLDDFGA DDLSAVLLPA QDGATPGFQQ SPLPVNSDGA SFAGEAVQSS VYLGGAKEEQ  60
DGTKANITTL SSVDEDHGAL ASAFFGGHRG VNMDMLNRAF AQGMEEAKKF LPANNALFID  120
LEAPITGERL STDSKPKGGL MTRQVKEEET VADEMPTMFR ESSNGRGRKN RHHDEDLEAE  180
TGRSSKQMMQ EEQEETGAQE MYREIMSCSY EEFVKRMEDL RVAMDSESEK TSRRGSRKGA  240
RGRQLADEVV DLRTMLIHCA QAVATGDLRS ANEMLKQIKQ HSSPRGDATQ RMAHCFAEGL  300
EARLAGTGSL VYQSLVSKRT SVVDFLKAYQ LFMAATCFKK AQHTFSSRTI LDAVAGRSKL  360
HIVEYGVQHG FQWPTLLHFL AGREGGPPEV RFTGIDLPQP GFRPAYQLEK TGERLSNCAR  420
QFRVPFKFHA IATKWETVTA QDLNIDPDEV LVVNCECFFD KLMDESVLVD SPSPRDVVLR  480
NIRNMRPNVF VHSVVNGTFG APFFLTRFRE ALFFYSAHFD MLDATIPRDN DVRLLIEQDL  540
IGRSALNVIA CEGADRVDRP ETYKQWQVRN NRAGLRQLPL SPEVVNLVRG KVRNYYHKDF  600
LLDEDHRWLL QGWKGRICST KNFVPREREK NLTVHPFAIC SNDRSQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-42	235	626	1	381	Protein SCARECROW
5b3h_A	1e-42	258	626	24	380	Protein SCARECROW
5b3h_D	1e-42	258	626	24	380	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462854319

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025826965.1	0.0	scarecrow-like protein 34
TrEMBL	A0A2T7CRC2	0.0	A0A2T7CRC2_9POAL; Uncharacterized protein
STRING	Pavir.Hb00044.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-147	SCARECROW-like 14