PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462854301 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | GRAS | ||||||||
Protein Properties | Length: 2321aa MW: 260674 Da PI: 6.876 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 44.4 | 2.7e-14 | 2 | 91 | 271 | 369 |
GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369 l+a +pr++++r vEr l+gr i+n++aceg++r+er et+++W++r ++a +k++pl++ ++k l+ +++ + + +v+gWk+r L++ 462854301 2 LDAIAPRDNDQRLLVERDLFGRCIMNLIACEGSDRVERPETYKQWQMRNHRARLKQLPLDSGVVK----LVGDKANE-----QFRTDFVIGWKGRILYA 91 78899******************************************************998765....33333323.....33445777777777775 PP | |||||||
2 | GRAS | 325.8 | 8.6e-100 | 424 | 793 | 1 | 370 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 l++lL++cA+a+s +d + a++lL +++++ sp+gd++qRla+ f+ +L+arla+++se+yk+l +++ts ++e l+a +l+ ++ + ++ N 462854301 424 LRTLLIHCAQAMSMDDRRSATELLVQIKQHTSPRGDANQRLAHLFAVGLEARLAGMGSEVYKSLMTKHTS---VVEFLKACQLYLAACCFEMTAFRFSNM 520 6789***************************************************************999...*************************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 +I +a++ ++vHi+D+++++G+QW +Ll +a+ ++gpp++RiTg++ p++g + ++eetg+rL++ A+ +gvpf+f+ +a +++++++++L+++p 462854301 521 TICKAIADRKKVHIVDYGVQYGFQWSSLLAHFATWEGGPPEVRITGIDLPQPGfrPASRVEETGRRLSNCAHLFGVPFKFHG-IAAKWDAISVDDLDIDP 619 ****************************************************9*9***************************.799************** PP GRAS 199 gEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 +E+l++n+++q +l+de v ++s +rd vL+ +++++P+v++++ + +++ + F++rf eal yysa+fd+l+a++pr++e+r +vEre++gr ++n 462854301 620 DEVLIINSIMQFGNLMDEGVYMHSpsPRDVVLNNIQKMRPDVFILCVVNGSYGVPFFVTRFREALFYYSAMFDMLDATVPRDNEQRLVVEREIIGRYAMN 719 *******************99998889************************************************************************* PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370 v+aceg +r er et+++W+ r ++aG++++pl +++k + +++ + + + ++ +++++++gWk+r L+++ 462854301 720 VIACEGLDRAERPETYKQWQVRNHRAGLRQLPLYPDIVKILREKVKNQYHKDFVIDVDHNWFLQGWKGRILYAI 793 *************************************************888*******************986 PP | |||||||
3 | GRAS | 339.5 | 5.8e-104 | 996 | 1367 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 +lLl+cA+a++++d ++a++lL +++++asp+gd +qRla +f+e+L+arla+++s+ly++l +++ts +++ l+a+klf ++ + k+++ N 462854301 996 HTLLLHCAQAMAADDCRNAHELLRKIKQHASPSGDGVQRLAYCFAEGLEARLAGTGSQLYQSLMVRRTS---VVDFLKAYKLFMAACCCKKVAFTFSN 1090 679*****************************************************************9...************************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195 ++I +a+ g +r+Hi+D+++++G+QWp Ll+ La+R++gpp++RiTg++ p++g + ++eetg+rL+k A+e+gvpf+f+ +a + e++++e+L+ 462854301 1091 KTIHDAMTGRTRLHIVDYGLNYGFQWPGLLRGLAAREGGPPEVRITGIDLPQPGfhPAYQIEETGRRLSKCAQEFGVPFRFHG-IAAKRETIRPEDLN 1187 *****************************************************99999*************************.69999********* PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291 ++p E+l+V++ + +l+des++ + +rd+vL+ +++++P+v+++ + ++++ F +rf e l ++sa fd l+a++pr+seer+ vEr ++g 462854301 1188 IDPAEVLVVSSLCHFRHLMDESAAPGQlsPRDQVLNNIQKMRPDVFIHGVMNGGYGTTYFPTRFRELLFFFSAQFDLLDATVPRDSEERMLVERDIFG 1285 *********************998777779******************************************************************** PP GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +++ nv+aceg++r+er et+++W++r ++aG+k+++ls +++k + +++ + + + v+e++ +l+ Wk+r L+++S W 462854301 1286 QAALNVIACEGTDRVERPETYKQWQARNHRAGLKQLALSPEVVKVVLDKVKNNYHKDFIVDEDQRWLLHRWKGRVLYALSTW 1367 ******************************************************888************************* PP | |||||||
4 | GRAS | 199 | 2.9e-61 | 1488 | 1725 | 2 | 240 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 +lLl+cA+av++ d + a lL++++e+asp gd++qRla +f+++L+arla+++ ++y++l++++ts +e l a+k+f ++ + k+++ aN 462854301 1488 HTLLLHCAKAVTD-DRTSAGLLLKQIKEHASPMGDATQRLAYCFAQGLEARLAGTGRQVYRSLSANRTS---IVEFLEAYKMFMSTCCFRKVAFAFAN 1581 679********98.78899********************************************999998...9************************* PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195 ++I +a+ g +++Hi+D+++ +G+QWp Ll+ L +R++gpp++RiT ++ p++g ++ + e+g+rL+k A+e+gvpf+f++ + +e++ e+L+ 462854301 1582 KTIFDAAMGRSKLHILDYGLHYGFQWPELLRLLGARDGGPPEVRITSIDLPQTGfrPANHMAEMGHRLSKCAREFGVPFKFHP-MLAPWETVCAEDLN 1678 *****************************************************9*9***************************.799*********** PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvv 240 v+p+Eal+Vn ++ +l+des ++s +rd vL+ + +++P+ v+ 462854301 1679 VEPDEALVVNDLFNFRTLMDESIVIDStsPRDVVLNNITKMKPNAVT 1725 **********************99888779**************998 PP | |||||||
5 | GRAS | 305.5 | 1.3e-93 | 1726 | 2083 | 15 | 373 |
GRAS 15 gdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeerv 112 +d + a lL++++e+asp gd++qRla +f+++L+arla+++ ++y++l++++ts +e l a+klf ++ + k+++ aN++I +a+ g +++ 462854301 1726 DDRTSAGLLLKQIKEHASPMGDATQRLAYCFAQGLEARLAGTGRQVYRSLSANRTS---IVEFLEAYKLFMSTCCFRKVAFAFANKTIFDAAMGRSKL 1820 56778999******************************************999998...9************************************** PP GRAS 113 HiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvl 208 Hi+D+++ +G+QWp Ll+ L +R++gpp++RiT ++ p++g ++ + e+g+rL+k A+e+gvpf+f++ + +e++ e+L+v+p+Eal+Vn + 462854301 1821 HILDYGLHYGFQWPELLRLLGARDGGPPEVRITSIDLPQTGfrPANHMAEMGHRLSKCAREFGVPFKFHP-MLAPWETVCAEDLNVEPDEALVVNDLF 1917 ****************************************9*9***************************.799************************ PP GRAS 209 qlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae 304 + +l+des ++s +rd vL+ + +++P+v++ + ++ +++Fl rf eal +salfd+l+a++pre++ r ++Er ++g+ + n++aceg++ 462854301 1918 NFRTLMDESIVIDStsPRDVVLNNITKMKPNVFIQGIVNGSY-GTTFLSRFREALFDHSALFDMLDATMPRENQLRLVIERDIFGWVALNAIACEGED 2014 *********99888779************************9.679**************************************************** PP GRAS 305 rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 r+e et+++W+ r ++aG++++pl+ +++k a ++++++ + +++ee +++l++gWk+r L++ S W 462854301 2015 RVECGETYKQWQVRNQQAGLRKLPLNREIVKMATDIVKNHYHKNFMIEEGQQWLLQGWKGRILLAHSTW 2083 *****************************************999************************* PP | |||||||
6 | GRAS | 29.1 | 1.3e-09 | 2275 | 2319 | 3 | 47 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfte 47 +lL++cA+av+++++ a +lL++++++as +gd+ qRla++f+e 462854301 2275 TLLIHCAQAVAANNHMIAIELLKQIKQNASTTGDARQRLAQCFAE 2319 68*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 12.894 | 1 | 85 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.5E-12 | 2 | 91 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 57.515 | 398 | 777 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.0E-97 | 424 | 793 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 59.784 | 969 | 1348 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.0E-101 | 996 | 1367 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 31.757 | 1461 | 1688 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.0E-58 | 1488 | 1725 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 52.266 | 1686 | 2064 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.5E-91 | 1726 | 2083 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 10.792 | 2247 | 2321 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.3E-7 | 2275 | 2319 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 2321 aa Download sequence Send to blast |
MLDAIAPRDN DQRLLVERDL FGRCIMNLIA CEGSDRVERP ETYKQWQMRN HRARLKQLPL 60 DSGVVKLVGD KANEQFRTDF VIGWKGRILY AIDGEDLASS ADLVLPFISR MLMEEDIEDE 120 FFYHYPDHPV LLQAQQTYAQ ILSDDSTTSA SSDSATTNTD KSGVFTLLPS SCDASFSNAT 180 WPYNPVELSQ LLLSTPYPNT GVGVNSFIAG DANRRGSIHE NADEATALCK EDRMGIQSSG 240 FLNEAGKDTD AVITNLAAGA GGGMHGVVTS AFFSGQNLVN MDMLNQSFLM GMEEAKKFLP 300 PNNILLMDPR STSTEQRPRD SNLFQGIAAG QLKEDKLLKF QGSVYGRGRK NRRNWDDLEA 360 EMGKNKMMVP EPEETGDVVD KMIIHGYAMC LEKMKSLSII MSDEAEKNAR KGDGKQSSYE 420 AVDLRTLLIH CAQAMSMDDR RSATELLVQI KQHTSPRGDA NQRLAHLFAV GLEARLAGMG 480 SEVYKSLMTK HTSVVEFLKA CQLYLAACCF EMTAFRFSNM TICKAIADRK KVHIVDYGVQ 540 YGFQWSSLLA HFATWEGGPP EVRITGIDLP QPGFRPASRV EETGRRLSNC AHLFGVPFKF 600 HGIAAKWDAI SVDDLDIDPD EVLIINSIMQ FGNLMDEGVY MHSPSPRDVV LNNIQKMRPD 660 VFILCVVNGS YGVPFFVTRF REALFYYSAM FDMLDATVPR DNEQRLVVER EIIGRYAMNV 720 IACEGLDRAE RPETYKQWQV RNHRAGLRQL PLYPDIVKIL REKVKNQYHK DFVIDVDHNW 780 FLQGWKGRIL YAIPSPLPTI GICSPRHFSA QILSDATTTS NSSASPDSPD TESTFAGGGV 840 NSDSDHSGMA SSGFVKPLSP AGDWDMFTSA FVKGMEEANK FLPTNSALAD HKLDRGFSIE 900 KEQVDGMLGH GRGRKNKHGC NDDLDVKEHR ASKLIMMETE DAAARQMFDE MMLHEQDICM 960 KGVQHLSIST ERAKGSGKKA RGRRQTSGSE DVVDLHTLLL HCAQAMAADD CRNAHELLRK 1020 IKQHASPSGD GVQRLAYCFA EGLEARLAGT GSQLYQSLMV RRTSVVDFLK AYKLFMAACC 1080 CKKVAFTFSN KTIHDAMTGR TRLHIVDYGL NYGFQWPGLL RGLAAREGGP PEVRITGIDL 1140 PQPGFHPAYQ IEETGRRLSK CAQEFGVPFR FHGIAAKRET IRPEDLNIDP AEVLVVSSLC 1200 HFRHLMDESA APGQLSPRDQ VLNNIQKMRP DVFIHGVMNG GYGTTYFPTR FRELLFFFSA 1260 QFDLLDATVP RDSEERMLVE RDIFGQAALN VIACEGTDRV ERPETYKQWQ ARNHRAGLKQ 1320 LALSPEVVKV VLDKVKNNYH KDFIVDEDQR WLLHRWKGRV LYALSTWGVE EASKFLPADT 1380 GCKLVSGGQL KDKSGDKVRR GRHGAGHEEL EAQVGRTSKM STAELEEAGA RDLFDEMMLR 1440 GYDVCSKGVG GLRIDVDKDD AAKESKKTTR KKNRARWERR GTKVVDLHTL LLHCAKAVTD 1500 DRTSAGLLLK QIKEHASPMG DATQRLAYCF AQGLEARLAG TGRQVYRSLS ANRTSIVEFL 1560 EAYKMFMSTC CFRKVAFAFA NKTIFDAAMG RSKLHILDYG LHYGFQWPEL LRLLGARDGG 1620 PPEVRITSID LPQTGFRPAN HMAEMGHRLS KCAREFGVPF KFHPMLAPWE TVCAEDLNVE 1680 PDEALVVNDL FNFRTLMDES IVIDSTSPRD VVLNNITKMK PNAVTDDRTS AGLLLKQIKE 1740 HASPMGDATQ RLAYCFAQGL EARLAGTGRQ VYRSLSANRT SIVEFLEAYK LFMSTCCFRK 1800 VAFAFANKTI FDAAMGRSKL HILDYGLHYG FQWPELLRLL GARDGGPPEV RITSIDLPQT 1860 GFRPANHMAE MGHRLSKCAR EFGVPFKFHP MLAPWETVCA EDLNVEPDEA LVVNDLFNFR 1920 TLMDESIVID STSPRDVVLN NITKMKPNVF IQGIVNGSYG TTFLSRFREA LFDHSALFDM 1980 LDATMPRENQ LRLVIERDIF GWVALNAIAC EGEDRVECGE TYKQWQVRNQ QAGLRKLPLN 2040 REIVKMATDI VKNHYHKNFM IEEGQQWLLQ GWKGRILLAH STWDEIGGEL LYQRSNYPAL 2100 LQVQQPLVQI LSSPSFTTRN YNTGNTEENK DLLPGGSDDQ STLSAPFFKG VDVAGAFLKG 2160 VEEAIRFLPS DNNIRRDYLV TEIFSESRNL KAIKKRYNRD NYLEDEARRT RKTMLMMIEE 2220 PEEVGIHEIL EEMMLRGYET CIKEMEKLQI ALNNEGKSKT RGGSKTTRDV VDLPTLLIHC 2280 AQAVAANNHM IAIELLKQIK QNASTTGDAR QRLAQCFAED P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-41 | 428 | 2083 | 4 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462854301 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826966.1 | 0.0 | scarecrow-like protein 30 | ||||
TrEMBL | A0A0E0MIE4 | 0.0 | A0A0E0MIE4_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC11G20010.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-140 | GRAS family protein |