PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462854230
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NF-YC
Protein Properties Length: 286aa    MW: 31581.3 Da    PI: 9.0837
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462854230genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC612.5e-19391181998
      NF-YC  19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
                +++P arikki++adedv +i+  +Pvl+s+a elf+ +l  r++  + ++  +tl+   ++++v+r   fdfl+++v +
  462854230  39 TRFPAARIKKIMQADEDVGKIALAVPVLVSRALELFLQDLIDRTYEITLQSGAKTLNSFHLKQCVKRYSSFDFLTEVVNK 118
                689************************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.54E-2033137IPR009072Histone-fold
Gene3DG3DSA:1.10.20.106.5E-2634104IPR009072Histone-fold
PfamPF008087.3E-1940103IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
KRKKKGKKKA RKEREHDSTR RRRGGCEAAE AKMRKKLGTR FPAARIKKIM QADEDVGKIA  60
LAVPVLVSRA LELFLQDLID RTYEITLQSG AKTLNSFHLK QCVKRYSSFD FLTEVVNKVP  120
DLGGADSCGD ERGLPRRRKS GSDPENDESR SSKMAVRSSL SPRGRGRGRG RGRGRPPTKR  180
KEVGYVQFED ESSMYAEQSE PLPGEDTVLE TNHGNESIPQ STHLPPVEAA PSAPAPATSS  240
KVEEANTDHQ ADWPMPDAIG NIGVGPSGFG HLTVQVDEDE DYDNED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A6e-2334103574Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1311KKGKKKARK
2622KKKARKEREHDSTRRRR
3134138PRRRK
4164173RGRGRGRGRG
5164174RGRGRGRGRGR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462854230
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002449647.11e-148dr1-associated corepressor
TrEMBLC5Y3V71e-147C5Y3V7_SORBI; Uncharacterized protein
STRINGSb05g020860.11e-148(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21723679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.12e-52nuclear factor Y, subunit C11