PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462854161 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | AP2 | ||||||||
Protein Properties | Length: 507aa MW: 54423.8 Da PI: 6.5677 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.4 | 6.1e-12 | 135 | 189 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkf...gtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f + +e+Aa+a++ a++k++g 462854161 135 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFsgyDKEEKAARAYDLAALKYWG 189 57****************988633...4888888853337789*************98 PP | |||||||
2 | AP2 | 48.1 | 3e-15 | 232 | 283 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g 462854161 232 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 283 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.77E-15 | 135 | 198 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.74E-21 | 135 | 199 | No hit | No description |
Pfam | PF00847 | 4.5E-8 | 135 | 189 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-27 | 136 | 203 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.527 | 136 | 197 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-15 | 136 | 198 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.48E-24 | 232 | 293 | No hit | No description |
SuperFamily | SSF54171 | 5.49E-18 | 232 | 293 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.5E-10 | 232 | 283 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-33 | 233 | 297 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.348 | 233 | 291 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-18 | 233 | 291 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 507 aa Download sequence Send to blast |
MDTSHNYPWL NFSLAHHCDL EEQERGAAAE LAAIAGAAPP PKLEDFLGGG NNNNGGGXXX 60 XXXXXXXXXX XXXXAAPSPS PVSSVEQGDA KLALPAAAAQ APAPEQRKAV DSFGQRTSIY 120 RGVTRKSSGF SRGASIYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSGY DKEEKAARAY 180 DLAALKYWGS STTTNFPVAD YEKELEEMKN MTRQEFVASL RRKSSGFSRG ASIYRGVTRH 240 HQHGRWQARI GRVAGNKDLY LGTFSTEEEA AEAYDIAAIK FRGLNAVTNF EISRYNVESI 300 ISSNLPIGSM SAGGRSTKAV ESTPSNSPDA ITGGEAGTVP QSLAFSALPV KYDQQDYLSM 360 LALQHHQQGN LQGLGFGLYS SGVNLDFASS GGAGAMAHCY TNGASHEQYQ QQQDQQQQDQ 420 SQGSNSCSSI PYATPIAFGS KSGPAKLIVS QEAPAANHGE EERCETKGFR LILAMEDLLP 480 SVEREGEVEV SCGSSAEGGH VKAGDLV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462854161 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004960245.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 | ||||
Swissprot | Q6PQQ3 | 5e-98 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A0A9DUL3 | 0.0 | A0A0A9DUL3_ARUDO; Uncharacterized protein | ||||
STRING | Si021959m | 1e-180 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP797 | 38 | 151 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 4e-92 | AINTEGUMENTA-like 5 |
Publications ? help Back to Top | |||
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