PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462854107
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 606aa    MW: 66601.2 Da    PI: 7.9601
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462854107genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85.2e-1862108148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd+ l +av+ + g++Wk+Ia++++  Rt+ qc +rwqk+l
        462854107  62 KGGWTPEEDDTLRKAVEAFKGRNWKKIAEYFP-DRTEVQCLHRWQKVL 108
                      688*****************************.************986 PP
2Myb_DNA-binding63.63.9e-20114160148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd++++d+vk++G+  W+ Iar ++ gR +kqc++rw+++l
        462854107 114 KGPWTQEEDDKIIDLVKKYGPTKWSVIARSLP-GRIGKQCRERWHNHL 160
                      79******************************.*************97 PP
3Myb_DNA-binding57.62.9e-18166209146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT+eE+  l++a++ +G++ W+ Ia+ ++ gRt++++k++w++
        462854107 166 KDAWTPEEERALINAHRVYGNK-WAEIAKVLP-GRTDNSIKNHWNS 209
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.25357108IPR017930Myb domain
SMARTSM007175.9E-1661110IPR001005SANT/Myb domain
PfamPF002491.3E-1662108IPR001005SANT/Myb domain
SuperFamilySSF466891.0E-1563118IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-2164118IPR009057Homeodomain-like
CDDcd001673.53E-1465108No hitNo description
PROSITE profilePS5129431.783109164IPR017930Myb domain
SuperFamilySSF466891.94E-32111207IPR009057Homeodomain-like
SMARTSM007178.5E-19113162IPR001005SANT/Myb domain
PfamPF002491.8E-18114160IPR001005SANT/Myb domain
CDDcd001679.48E-17116160No hitNo description
Gene3DG3DSA:1.10.10.601.0E-27119168IPR009057Homeodomain-like
SMARTSM007174.7E-18165213IPR001005SANT/Myb domain
PROSITE profilePS5129424.236165215IPR017930Myb domain
PfamPF002491.4E-16166209IPR001005SANT/Myb domain
CDDcd001679.80E-15168211No hitNo description
Gene3DG3DSA:1.10.10.603.7E-24169215IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MAASNFIPVF LLFPLTFNGR GCGGDEEVMV AMAEAVQEGC VENRQPLAAS SSRTSGPIRR  60
AKGGWTPEED DTLRKAVEAF KGRNWKKIAE YFPDRTEVQC LHRWQKVLNP ELIKGPWTQE  120
EDDKIIDLVK KYGPTKWSVI ARSLPGRIGK QCRERWHNHL NPDIRKDAWT PEEERALINA  180
HRVYGNKWAE IAKVLPGRTD NSIKNHWNSS LRKKLDVYSP TNVLAVPKLF GRDDFKDKMK  240
PVATENHLDL NIMPRVGSKD FPGIAHRSNM SPLSQAYKSE GIKDCSGFLS LSISTTQPPT  300
SYEMSSLVDG SAVTLAVQGR ESDSVRDKGL EIDSFHEKGI EVSSTPGPVG EVCTIQLESA  360
RAGSGPESSL KNELHSTLGP LCYKTLDMKD VDSVSSPPRG AHQITHERLM SPNGFTSPSS  420
TGLTVDSILK NAADSFPGTP SILRRRKRDK STPASDSELK IGGGTTDSFF TPNGKGTTTD  480
TPRSFKTASF LSLAPLDGLL TSVRSCDTSP PYQIRSKRMA AMKTVSHHLD FSADGLDTSG  540
SEILNSPCDK SQGANSITEA LRMQAKELNE HVTQLETLTK DVAHTADLDE LISILRSMMG  600
HKCLPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-75612155159MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-75612155159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1444449RRKRDK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462854107
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970536.10.0transcription factor MYB3R-2
SwissprotQ0JHU70.0MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLA0A368RD030.0A0A368RD03_SETIT; Uncharacterized protein
STRINGSi000842m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-110myb domain protein 3r-5
Publications ? help Back to Top
  1. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]