PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462853715

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NAC

Protein Properties

Length: 265aa MW: 29398.6 Da PI: 10.4175

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462853715	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	153.7	8.4e-48	56	175	1	122
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lppGfrFhPtdeel+++yL+ k+++ ++ + +++ e+d++k+ePwdLp++++ +ekewyfF+ +d+ky+tg r+nrat+sgyWkatgkd+e+++ +++lv 462853715 56 LPPGFRFHPTDEELITHYLAMKAADPRFVA-RAVGEADLNKCEPWDLPARATWGEKEWYFFVVKDRKYPTGLRTNRATESGYWKATGKDREIFR-GKALV 153 79***********************999.88***********988899************************************.99* PP NAM 101 glkktLvfykgrapkgektdWv 122 g+kktLvfy+grap+g kt W 462853715 154 GMKKTLVFYTGRAPRGGKTGWG 175 *********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.84E-56	43	206	IPR003441	NAC domain
PROSITE profile	PS51005	51.645	56	206	IPR003441	NAC domain
Pfam	PF02365	1.7E-22	57	175	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
PLKNPKGTSC AIDYKNQARF KTSILGSLAR QVMEHDVHHL HHHLHQQQQP QQAMELPPGF 60 RFHPTDEELI THYLAMKAAD PRFVARAVGE ADLNKCEPWD LPARATWGEK EWYFFVVKDR 120 KYPTGLRTNR ATESGYWKAT GKDREIFRGK ALVGMKKTLV FYTGRAPRGG KTGWGVANGA 180 GSSSLLPSIK AATSKDEWVL CRVFKKNIEL PSPVAGGKRS AGSSCMGVAD VGPSSMSMAD 240 ELAACAQLPP LSRRRPSSRR HPQHT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-51	42	207	3	166	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-51	42	207	3	166	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-51	42	207	3	166	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-51	42	207	3	166	NO APICAL MERISTEM PROTEIN
4dul_A	6e-51	42	207	3	166	NAC domain-containing protein 19
4dul_B	6e-51	42	207	3	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462853715

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT065898	1e-146	BT065898.1 Zea mays full-length cDNA clone ZM_BFb0063K15 mRNA, complete cds.
GenBank	KJ728021	1e-146	KJ728021.1 Zea mays clone pUT6157 NAC transcription factor (NAC40) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004952889.1	1e-112	NAC domain-containing protein 92
Refseq	XP_022679460.1	1e-112	NAC domain-containing protein 92
Swissprot	Q9FLJ2	5e-76	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A3L6RW05	1e-115	A0A3L6RW05_PANMI; NAC domain-containing protein 92-like
STRING	Si017567m	1e-111	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2730	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	4e-77	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]