PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462853703
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 89aa    MW: 10245.9 Da    PI: 10.0474
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462853703genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding605.2e-191562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+e+d++l+ +++q+G g+W++ +++ g++R++k+c++rw +yl
        462853703 15 KGPWTPEDDQKLLAYIEQHGHGCWRSLPAKAGLRRCGKSCRLRWTNYL 62
                     79********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-25765IPR009057Homeodomain-like
PROSITE profilePS5129424.1251066IPR017930Myb domain
SMARTSM007179.1E-151464IPR001005SANT/Myb domain
PfamPF002494.0E-171562IPR001005SANT/Myb domain
SuperFamilySSF466891.08E-231689IPR009057Homeodomain-like
CDDcd001671.46E-111762No hitNo description
Gene3DG3DSA:1.10.10.607.9E-96689IPR009057Homeodomain-like
PROSITE profilePS512948.0126789IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MGRSPCCEKE AGLKKGPWTP EDDQKLLAYI EQHGHGCWRS LPAKAGLRRC GKSCRLRWTN  60
YLRPDIKRGK FTLQEEQTII QLHALLGNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-171389580B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462853703
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794241e-113HF679424.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB18 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021315868.13e-59transcription factor MYB16
RefseqXP_025817649.13e-59transcription factor MYB106-like
SwissprotQ9LE633e-54MY106_ARATH; Transcription factor MYB106
TrEMBLA0A0C6WCM55e-58A0A0C6WCM5_9POAL; ScMYB18 protein
TrEMBLA0A1Z5RNN47e-58A0A1Z5RNN4_SORBI; Uncharacterized protein
TrEMBLA0A2S3GQC26e-58A0A2S3GQC2_9POAL; Uncharacterized protein
TrEMBLA3A8C24e-58A3A8C2_ORYSJ; Uncharacterized protein
TrEMBLQ6EP515e-58Q6EP51_ORYSJ; MYB27 protein-like
STRINGPavir.Ab02021.1.p1e-58(Panicum virgatum)
STRINGSb04g024000.11e-58(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.12e-55myb domain protein 16