PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462853150 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB_related | ||||||||
Protein Properties | Length: 94aa MW: 10531 Da PI: 8.7192 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 62 | 1.3e-19 | 14 | 70 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT..........-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..........tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ lv +v+++G+g W++Ia++++ Rt++++k++w+++l 462853150 14 KGPWTPEEDLMLVSYVQEHGPGnwravptntgKWAAIASYLP-ERTDNDIKNYWNTHL 70 79****************************************.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.14E-18 | 3 | 78 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-13 | 5 | 43 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.591 | 9 | 74 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-17 | 13 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-18 | 14 | 70 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.92E-14 | 16 | 70 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-12 | 44 | 78 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 94 aa Download sequence Send to blast |
MGRPPCCDKV GVKKGPWTPE EDLMLVSYVQ EHGPGNWRAV PTNTGKWAAI ASYLPERTDN 60 DIKNYWNTHL KKKLKKMQAG EGGAGVPEWP MHEA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462853150 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC165178 | 2e-57 | AC165178.2 Zea mays clone ZMMBBb-272P17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010939500.1 | 1e-44 | myb-related protein 306 | ||||
Swissprot | B3VTV7 | 2e-42 | MYB60_VITVI; Transcription factor MYB60 | ||||
TrEMBL | A0A0C6WCT4 | 3e-46 | A0A0C6WCT4_9POAL; ScMYB27 protein | ||||
TrEMBL | A0A368Q1V4 | 5e-45 | A0A368Q1V4_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ba01835.1.p | 3e-44 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP229 | 38 | 296 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47600.1 | 1e-43 | myb domain protein 94 |
Publications ? help Back to Top | |||
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