PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462853072 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | LBD | ||||||||
Protein Properties | Length: 215aa MW: 22818.7 Da PI: 7.8886 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 34.4 | 6.2e-11 | 16 | 46 | 1 | 31 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfa 31 +CaaCk +rrkCa+dC+lapyfpa+ +++ a 462853072 16 RCAACKNQRRKCAQDCILAPYFPASGANRGA 46 6***********************9887755 PP | |||||||
2 | DUF260 | 119.1 | 2.5e-37 | 54 | 154 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk +rrkCa+dC+lapyfpa++p+++a+v+++FGasn+ ++l++lp ++r +a+++++ eA+ r++dPvyG++gvi +lq +++ +++ela+++++ 462853072 54 RCAACKNQRRKCAQDCILAPYFPASDPQRYACVQRIFGASNIARMLQSLPVHDRGKAADTMATEAHRRVQDPVYGCAGVIARLQDEIRAVQSELARTEAQ 153 6**********************************************************************************************99987 PP DUF260 101 l 101 + 462853072 154 I 154 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 2.9E-9 | 16 | 46 | IPR004883 | Lateral organ boundaries, LOB |
PROSITE profile | PS50891 | 24.009 | 53 | 154 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.1E-37 | 54 | 151 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MSTSDNTAVA ANQGGRCAAC KNQRRKCAQD CILAPYFPAS GANRGAVAAN PGRRCAACKN 60 QRRKCAQDCI LAPYFPASDP QRYACVQRIF GASNIARMLQ SLPVHDRGKA ADTMATEAHR 120 RVQDPVYGCA GVIARLQDEI RAVQSELART EAQIAVHAAA AAGAQPEAGN QLNAQLVQGP 180 MQQQGDSLMV QEPFPGLDGL LDDVHAGATL FDDNI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-32 | 52 | 168 | 9 | 125 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-32 | 52 | 168 | 9 | 125 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462853072 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806770.1 | 9e-69 | LOB domain-containing protein 24-like | ||||
Swissprot | P59467 | 1e-38 | LBD23_ARATH; LOB domain-containing protein 23 | ||||
Swissprot | P59468 | 1e-38 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A0A3L6TJP8 | 5e-68 | A0A3L6TJP8_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J09684.1.p | 2e-62 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5282 | 35 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 5e-38 | LOB domain-containing protein 24 |