PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462852590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 562aa MW: 61920.2 Da PI: 4.1575 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 40.8 | 6.6e-13 | 10 | 54 | 2 | 48 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48 ppGfrF+Ptdeelv ++Lk+++++ + + i++vd+yk++P++Lp 462852590 10 PPGFRFSPTDEELVLYFLKRRITSGRPTP--YIADVDVYKSHPSHLP 54 8*********************9999555..6**************8 PP | |||||||
2 | NAM | 29.9 | 1.6e-09 | 55 | 83 | 100 | 128 |
NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg kktLv+++grap+ge+tdWvm ey++ 462852590 55 VGNKKTLVYHHGRAPRGERTDWVMYEYTI 83 89*************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 14.879 | 1 | 106 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.7E-25 | 5 | 106 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.8E-11 | 10 | 83 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 562 aa Download sequence Send to blast |
MESTPPRRWP PGFRFSPTDE ELVLYFLKRR ITSGRPTPYI ADVDVYKSHP SHLPVGNKKT 60 LVYHHGRAPR GERTDWVMYE YTILADAFPQ AAGACEAYAL YKLFQKSGAG PKNGEQYGAP 120 FREEDWLDDD EEEQGLSAGA VAHPVATVQQ QADRELPIVD LEELLAEFGS DQEQVEEQFD 180 FATPASSQGQ LHHVHGQGWL DNAGDKADIV DTSTGSGAVP VPENACTDLP LGDIEEFLMR 240 ISDDQQNAEL LSDFSSSVPE LQLQCDDHQV WLDADREGEF CATDPITGSG SVVTAGYTGA 300 ELPVGDLEGL LLQIANDREM VQPVSDLPTP FPHHNFNQVD IKGFQSPGDP VGSMSYNCQD 360 ADEFLEINDF FDLDEVEHNM NSTATEHLIS ATNGMFGNLE YSDAPSSLTG HFDTDEVVAE 420 NQFVDFGTLN LHTGNEPLNQ SSNASQTWFN AALSALLDSV PSSPALAAEI ENTVINRTFQ 480 RISSFRSQQA ANEESTVIYR TIQRISSFKS QQDAREEPST PVIKATRSRR LIFVSVLVLL 540 AGVMWTGPAV NFFKGLWKSS ST |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462852590 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK355552 | 2e-61 | AK355552.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1022I04. | |||
GenBank | AK362427 | 2e-61 | AK362427.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2005A11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025802095.1 | 0.0 | NAC domain-containing protein 82-like | ||||
TrEMBL | A0A1E5UTD4 | 0.0 | A0A1E5UTD4_9POAL; NAC domain-containing protein 16 | ||||
STRING | Pavir.J04800.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9128 | 28 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34190.1 | 1e-33 | NAC domain containing protein 17 |