PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462852146

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

MYB_related

Protein Properties

Length: 407aa MW: 45707.3 Da PI: 10.3206

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462852146	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.6	1.2e-07	155	196	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +W++eE ++l ++++++ + + Ia ++++ R+ +++ksr++ 462852146 155 AWSKEETDKLFELCERFDLR-FIVIADRFPTDRSVEDLKSRYY 196 7*****************.*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF16282	4.9E-29	128	202	IPR032563	DAMP1, SANT/Myb-like domain
SMART	SM00717	3.2E-7	152	201	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.43E-6	155	201	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.0E-5	155	201	IPR009057	Homeodomain-like
Pfam	PF05499	1.1E-6	277	340	IPR008468	DNA methyltransferase 1-associated 1

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
TFFVCLLRPG DASSKRPRLS PCCSRRIQNP NPSFGRRRPP RRTLSMDAKD ILGLPKTPFA 60 SSQEKKARTP KEPQRKPDGV SREVYALTGG VGMAPLMPTV EASHLKRRPA AEKEKVRVVN 120 GVQPTGDYQF AKYNKKVDVL KYTDEEYEKY LIDPAWSKEE TDKLFELCER FDLRFIVIAD 180 RFPTDRSVED LKSRYYSEAK RILESRAASK NADEAGVPSI SENAMVPVEG VSPLSGTQPP 240 LTNPYAAANS SIPNSLRTLR VYLRTYALDQ MIQAASASAG LRIIKRVDQT LQDLGVHLKP 300 KVPTKAVCVE HLELRNEILT LLNLQKQLQN KEAEVSANRE SSFMEAPSTP MRSNRDMDRP 360 FVPDTIGFTG ERAGKRDHKR KSTTGRFIDA PPSPPQSKRP RKLKASD

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

TFFVCLLRPG DASSKRPRLS PCCSRRIQNP NPSFGRRRPP RRTLSMDAKD ILGLPKTPFA  60
SSQEKKARTP KEPQRKPDGV SREVYALTGG VGMAPLMPTV EASHLKRRPA AEKEKVRVVN  120
GVQPTGDYQF AKYNKKVDVL KYTDEEYEKY LIDPAWSKEE TDKLFELCER FDLRFIVIAD  180
RFPTDRSVED LKSRYYSEAK RILESRAASK NADEAGVPSI SENAMVPVEG VSPLSGTQPP  240
LTNPYAAANS SIPNSLRTLR VYLRTYALDQ MIQAASASAG LRIIKRVDQT LQDLGVHLKP  300
KVPTKAVCVE HLELRNEILT LLNLQKQLQN KEAEVSANRE SSFMEAPSTP MRSNRDMDRP  360
FVPDTIGFTG ERAGKRDHKR KSTTGRFIDA PPSPPQSKRP RKLKASD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3hm5_A	3e-21	127	207	4	88	DNA methyltransferase 1-associated protein 1
4iej_A	3e-21	127	207	4	88	DNA methyltransferase 1-associated protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305\|Ref.5}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462852146

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025805626.1	0.0	SWR1-complex protein 4
Swissprot	Q8VZL6	1e-119	SWC4_ARATH; SWR1-complex protein 4
TrEMBL	A0A2S3HA29	0.0	A0A2S3HA29_9POAL; Uncharacterized protein
TrEMBL	A0A2T7EB13	0.0	A0A2T7EB13_9POAL; Uncharacterized protein
STRING	Pavir.J03534.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6153	12	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47210.1	1e-106	MYB_related family protein

Publications ? help Back to Top
Gómez-Zambrano Á, et al. Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes. Mol Plant, 2018. 11(6): p. 815-832 [PMID:29604400]