PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462851818 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 167aa MW: 18873.9 Da PI: 11.9459 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 37.3 | 4.8e-12 | 45 | 73 | 28 | 56 |
HHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 28 eereeLAkklgLterqVkvWFqNrRakek 56 +++ LAk+l+L rqV vWFqNrRa+ k 462851818 45 KQKVALAKQLNLRPRQVEVWFQNRRARTK 73 78899**********************98 PP | |||||||
2 | HD-ZIP_I/II | 105.6 | 3.9e-34 | 4 | 108 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLep...............erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 +kk+rl+keq++lLE+ F+e+++L+p ++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke 462851818 4 RKKLRLTKEQSALLEDRFKEHSTLNPvrtirhpgvrarhvrKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLHKE 101 69***********************8666666666655555689****************************************************** PP HD-ZIP_I/II 84 veeLreel 91 +eLr +l 462851818 102 LAELR-AL 108 ****9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 14.188 | 1 | 75 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.4E-9 | 2 | 79 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-15 | 4 | 78 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.31E-12 | 4 | 83 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.41E-10 | 4 | 76 | No hit | No description |
Pfam | PF00046 | 2.0E-9 | 45 | 73 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 50 | 73 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 4.8E-23 | 75 | 118 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 2.8E-11 | 75 | 109 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MCTRKKLRLT KEQSALLEDR FKEHSTLNPV RTIRHPGVRA RHVRKQKVAL AKQLNLRPRQ 60 VEVWFQNRRA RTKLKQTEVD CEFLKRCCET LTEENRRLHK ELAELRALKF ASPAPPSATP 120 PAASARPATG WAPRPPPLRP TRTGPPRPAS GQPIPSSTHS PTPPPAS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 8 | TRKKLRL |
2 | 67 | 75 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462851818 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP097788 | 8e-64 | FP097788.1 Phyllostachys edulis cDNA clone: bphylf059k15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627843.1 | 1e-55 | homeobox-leucine zipper protein HOX19 isoform X1 | ||||
Refseq | XP_015689823.1 | 6e-56 | PREDICTED: homeobox-leucine zipper protein HOX19-like, partial | ||||
Swissprot | A2XE76 | 7e-55 | HOX19_ORYSI; Homeobox-leucine zipper protein HOX19 | ||||
Swissprot | Q8GRL4 | 7e-55 | HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19 | ||||
TrEMBL | I1P950 | 4e-53 | I1P950_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA03G0089600.1 | 6e-54 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2055 | 36 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 1e-49 | homeobox from Arabidopsis thaliana |