PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462851776

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NAC

Protein Properties

Length: 165aa MW: 18946.7 Da PI: 10.1392

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462851776	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.8	6.2e-55	12	137	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lppGfrFhPtdeel+++yL++kv++ ++++ +++e+d++k+ePwdLp+ +k +ekewyfF+ +d+ky+tg r+nrat++gyWkatgkdk++++ +++lv 462851776 12 LPPGFRFHPTDEELITHYLARKVADARFTA-LAVSEADLNKTEPWDLPSLAKMGEKEWYFFCLKDRKYPTGLRTNRATEAGYWKATGKDKDIFR-GKALV 109 79***********************999.67***********8888899***********************************.99* PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 g kktLvfy+grapkgek+ Wvmheyrl 462851776 110 GSKKTLVFYTGRAPKGEKSGWVMHEYRL 137 **************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-59	8	142	IPR003441	NAC domain
PROSITE profile	PS51005	53.697	12	165	IPR003441	NAC domain
Pfam	PF02365	6.4E-30	13	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MEQQDLHQPM DLPPGFRFHP TDEELITHYL ARKVADARFT ALAVSEADLN KTEPWDLPSL 60 AKMGEKEWYF FCLKDRKYPT GLRTNRATEA GYWKATGKDK DIFRGKALVG SKKTLVFYTG 120 RAPKGEKSGW VMHEYRLHGR HNGVPKIASK VGISFSSSLW RIFQN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-51	1	147	6	154	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-51	1	147	6	154	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-51	1	147	6	154	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-51	1	147	6	154	NO APICAL MERISTEM PROTEIN
3swm_A	2e-51	1	147	9	157	NAC domain-containing protein 19
3swm_B	2e-51	1	147	9	157	NAC domain-containing protein 19
3swm_C	2e-51	1	147	9	157	NAC domain-containing protein 19
3swm_D	2e-51	1	147	9	157	NAC domain-containing protein 19
3swp_A	2e-51	1	147	9	157	NAC domain-containing protein 19
3swp_B	2e-51	1	147	9	157	NAC domain-containing protein 19
3swp_C	2e-51	1	147	9	157	NAC domain-containing protein 19
3swp_D	2e-51	1	147	9	157	NAC domain-containing protein 19
4dul_A	2e-51	1	147	6	154	NAC domain-containing protein 19
4dul_B	2e-51	1	147	6	154	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462851776

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT060770	1e-161	BT060770.2 Zea mays full-length cDNA clone ZM_BFb0046M18 mRNA, complete cds.
GenBank	BT063543	1e-161	BT063543.1 Zea mays full-length cDNA clone ZM_BFc0075B16 mRNA, complete cds.
GenBank	BT084493	1e-161	BT084493.2 Zea mays full-length cDNA clone ZM_BFb0122M24 mRNA, complete cds.
GenBank	JX428530	1e-161	JX428530.1 Zea mays subsp. mays clone pUT3130 NAC32 NAC type transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004975858.1	3e-97	NAC domain-containing protein 92 isoform X1
Swissprot	Q9FLJ2	1e-78	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A368RWM7	7e-96	A0A368RWM7_SETIT; Uncharacterized protein
STRING	Si010553m	1e-96	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2730	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	4e-81	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]