PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462851587
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family BBR-BPC
Protein Properties Length: 329aa    MW: 36575.2 Da    PI: 9.9018
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462851587genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind393.92.2e-12013291301
  GAGA_bind   1 mdddgsre..rnkg.yye........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllven 89 
                md+ g+re  r+++ +y+        p+++lk++ +++++++++e+d++irer++al+ekkaa+aerd+af+qrd+a+aern+a+verdn+l+al+l+++
  462851587   1 MDNLGHREngRQRPdQYKaihtqwmmPQRQLKDHHSMNILALMNEKDSAIRERDHALAEKKAAIAERDEAFAQRDAAMAERNAAIVERDNALAALELART 100
                9999*99999****99*9*****999889******************************************************************99888 PP

  GAGA_bind  90 sla...salpvgvqvlsgtksidslqqlse.....pqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkak..kkkkksekskkkv 178
                +     + +++ ++ l+gtk+i++++qls+      ql+ds+++ +re++++ea+pi++a+ ++ + kk++k +++++p+++ +   +k+kk+++++k+ 
  462851587 101 NGFnmnNGNGFHQGPLNGTKNIHHHDQLSHvqsspLQLADSPYDhVREMHISEAYPISTAPGSVGKGKKPRKINSQASPLKRPSGvlRKTKKPTADWKNG 200
                75555588899999*************999999999********9*************************************999888888899999999 PP

  GAGA_bind 179 kkesader......skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekL 272
                  +++ e+      sk+e+k++dl+ln+vs+De+t+P+P+CsCtG lrqCYkWGnGGWqS+CCt++iS+yPLPv+++rr+aR++grKmS+gaf+klL++L
  462851587 201 GISGVGEDasrasvSKNEWKDQDLGLNQVSYDETTMPAPACSCTGELRQCYKWGNGGWQSSCCTMSISMYPLPVMPNRRHARMGGRKMSGGAFTKLLSRL 300
                888877445778889************************************************************************************* PP

  GAGA_bind 273 aaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                aaeG+dls+pvDLkdhWAkHGtn+++tir
  462851587 301 AAEGHDLSTPVDLKDHWAKHGTNRYITIR 329
                ****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.3E-1641329IPR010409GAGA-binding transcriptional activator
PfamPF062174.7E-961329IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MDNLGHRENG RQRPDQYKAI HTQWMMPQRQ LKDHHSMNIL ALMNEKDSAI RERDHALAEK  60
KAAIAERDEA FAQRDAAMAE RNAAIVERDN ALAALELART NGFNMNNGNG FHQGPLNGTK  120
NIHHHDQLSH VQSSPLQLAD SPYDHVREMH ISEAYPISTA PGSVGKGKKP RKINSQASPL  180
KRPSGVLRKT KKPTADWKNG GISGVGEDAS RASVSKNEWK DQDLGLNQVS YDETTMPAPA  240
CSCTGELRQC YKWGNGGWQS SCCTMSISMY PLPVMPNRRH ARMGGRKMSG GAFTKLLSRL  300
AAEGHDLSTP VDLKDHWAKH GTNRYITIR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462851587
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1847590.0KF184759.1 Saccharum hybrid cultivar R570 clone BAC 015H09 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141822.10.0BBR/BPC transcription factor
RefseqXP_008658294.10.0BBR/BPC transcription factor isoform X1
SwissprotQ5VSA80.0BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBLB4FYC00.0B4FYC0_MAIZE; BBR/BPC transcription factor
STRINGGRMZM2G118690_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62263756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-102basic pentacysteine 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]