PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462851551
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 327aa    MW: 36488.1 Da    PI: 8.3076
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462851551genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.63.8e-151469148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmg.......kgRtlkqcksrwqkyl 48
                     +g+W++eEd +l++ ++++G+g +W + +++ g       ++R++k+c++rw++yl
        462851551 14 KGPWSPEEDAKLKEFIEKHGTGgNWIALPQKAGtiyeiiwLRRCGKSCRLRWLNYL 69
                     79****************************************************97 PP
2Myb_DNA-binding38.23.4e-1276118246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T+ Ed ++ +  +  G++ W+ Ia+ ++ gRt++++k++w++
        462851551  76 GEFTEHEDRIICNMYASIGSR-WSIIASQLP-GRTDNDIKNYWNT 118
                      78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.102969IPR017930Myb domain
SuperFamilySSF466892.3E-2611116IPR009057Homeodomain-like
SMARTSM007175.6E-111371IPR001005SANT/Myb domain
PfamPF002491.5E-141469IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-231576IPR009057Homeodomain-like
CDDcd001671.81E-91669No hitNo description
PROSITE profilePS5129421.07170124IPR017930Myb domain
SMARTSM007174.2E-1274122IPR001005SANT/Myb domain
PfamPF002493.3E-1076118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-2377124IPR009057Homeodomain-like
CDDcd001679.86E-977120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MGRAPCCDKN NVKKGPWSPE EDAKLKEFIE KHGTGGNWIA LPQKAGTIYE IIWLRRCGKS  60
CRLRWLNYLR PNIKHGEFTE HEDRIICNMY ASIGSRWSII ASQLPGRTDN DIKNYWNTKL  120
KKKLLGTSAI TAPPHRAPRH HHRPLNLMLQ HSSPSLSQPT YSSFFSNAGS LHDPIIPALT  180
LPPPQDFMLS SSLAMTNASS LLQAHGVTQQ QLHHHVVKEE SGSMIVFGGD QQSCSSSDGG  240
AHSRQQFSNG KELSFDGYYG CNNGTMEHDH RLLQLQEHYQ QAQVPVDYNY EEIKQLLMSS  300
TAGNLHGGQG HEGGMEGFGS QGKVTMM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-25141247108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462851551
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0962052e-75FP096205.1 Phyllostachys edulis cDNA clone: bphylf043l07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975125.10.0transcription factor RAX2
TrEMBLK3Y8T50.0K3Y8T5_SETIT; Uncharacterized protein
STRINGSi010627m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.12e-73myb domain protein 68