PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462851136 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB_related | ||||||||
Protein Properties | Length: 161aa MW: 18222 Da PI: 4.5545 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33 | 1.4e-10 | 6 | 30 | 21 | 47 |
TT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 21 ggtWktIartmgkgRtlkqcksrwqky 47 ++ W++Ia++++ gRt++++k++w+++ 462851136 6 NR-WSKIAAKLP-GRTDNEIKNHWNTH 30 45.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.632 | 1 | 35 | IPR017930 | Myb domain |
CDD | cd00167 | 2.78E-8 | 5 | 31 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-14 | 6 | 48 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.1E-8 | 6 | 30 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.8E-10 | 6 | 40 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MAISENRWSK IAAKLPGRTD NEIKNHWNTH IKKKLIKMGI DPATHQPLAN SNAATSQSTN 60 TIESAKSSYS GDVQSLKECR QETMQIPTYS YEQSSQPEQS SNNCSHDLDQ MVNWRLESDL 120 PIDEPWPNFT SSSHDELGIV ADQLPWGGPT DWLLDYQDFD I |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462851136 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT068410 | 4e-56 | BT068410.1 Zea mays full-length cDNA clone ZM_BFb0166A10 mRNA, complete cds. | |||
GenBank | KJ727645 | 4e-56 | KJ727645.1 Zea mays clone pUT5572 MYB transcription factor (MYB167) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025820510.1 | 7e-68 | protein ODORANT1-like | ||||
Refseq | XP_025820511.1 | 7e-68 | protein ODORANT1-like | ||||
Refseq | XP_025820512.1 | 7e-68 | protein ODORANT1-like | ||||
Refseq | XP_025820514.1 | 7e-68 | protein ODORANT1-like | ||||
Refseq | XP_025820515.1 | 7e-68 | protein ODORANT1-like | ||||
Refseq | XP_025820516.1 | 7e-68 | protein ODORANT1-like | ||||
Refseq | XP_025820517.1 | 7e-68 | protein ODORANT1-like | ||||
Refseq | XP_025820518.1 | 7e-68 | protein ODORANT1-like | ||||
Refseq | XP_025820519.1 | 7e-68 | protein ODORANT1-like | ||||
Refseq | XP_025820520.1 | 7e-68 | protein ODORANT1-like | ||||
Refseq | XP_025820521.1 | 7e-68 | protein ODORANT1-like | ||||
Refseq | XP_025820522.1 | 7e-68 | protein ODORANT1-like | ||||
Refseq | XP_025820523.1 | 7e-68 | protein ODORANT1-like | ||||
TrEMBL | A0A3L6PP21 | 2e-68 | A0A3L6PP21_PANMI; Protein ODORANT1-like | ||||
STRING | Pavir.Fb02321.1.p | 8e-67 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12350.1 | 2e-23 | myb domain protein 42 |