PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462851085
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 530aa    MW: 59984.1 Da    PI: 7.0744
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462851085genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM32.72.1e-104399150
        NAM  1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkk 50
               lp+G++F+Ptd+el+ e+L++kv+++       +++  +i+++d    i++++P++Lp +
  462851085 43 LPAGVKFDPTDQELI-EHLEAKVKEEGsrshplIDE--FIPTIDgedgICYTHPEKLPGM 99
               799************.99******999677544333..3444433445*********942 PP
2NAM1141.6e-351412831128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tksgy 82 
                lp+G++F+Ptd+el+ e+L++kv+++       +++  +i+++d    i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+          + +
  462851085 141 LPAGVKFDPTDQELI-EHLEAKVKEEGsrshplIDE--FIPTIDgedgICYTHPEKLP-GVTRDGLSKHFFHRPSKAYTTGTRKRRKiqtecdvqKGETR 236
                799************.99******999677544333..3444433445**********.555666799******************75666664433778 PP

        NAM  83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  462851085 237 WHKTGKTRPVMV-NGRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 283
                ************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-1037100IPR003441NAC domain
SuperFamilySSF1019413.01E-39135302IPR003441NAC domain
PROSITE profilePS5100534.288141302IPR003441NAC domain
PfamPF023653.9E-16142283IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MNRGHISSSK LINEKLEEHQ ISTAKHCPNC HHKIDSKPDW VGLPAGVKFD PTDQELIEHL  60
EAKVKEEGSR SHPLIDEFIP TIDGEDGICY THPEKLPGMN RGHISSSKLI NEKLEEHQIS  120
TAKHCPNCHH KIDSKPDWVG LPAGVKFDPT DQELIEHLEA KVKEEGSRSH PLIDEFIPTI  180
DGEDGICYTH PEKLPGVTRD GLSKHFFHRP SKAYTTGTRK RRKIQTECDV QKGETRWHKT  240
GKTRPVMVNG RQKGCKKILV LYTNFGKHRK PEKTNWVMHQ YHLGDLEEEK EGELVVCKIF  300
YQTQPRQCSW SSDRVAATAQ EQRRRDSGSG SCSSRDHEVS ATSFPAGYTV TAAVEMQEHL  360
KQPTSDHFSF APFRKSFDQE VGIGGDQVPP DQLRRSDQQP HAGQEQQPHR PVLATTAVPA  420
TAFLISRPSN PVSTIVPPAL QHASVVLDHD QFHVPAILLH HHDKFQHQHQ HQPQHQQPHQ  480
KLDRRSAGLE ELIMGCTSST SAKGEASIPQ PQETEWPYQY WPPDNQDHHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-1113928313140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462851085
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0686010.0BT068601.1 Zea mays full-length cDNA clone ZM_BFb0363G10 mRNA, complete cds.
GenBankBT0865770.0BT086577.1 Zea mays full-length cDNA clone ZM_BFc0185G06 mRNA, complete cds.
GenBankEU9747770.0EU974777.1 Zea mays clone 457960 ANAC075 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818124.10.0NAC domain-containing protein 75-like isoform X2
SwissprotQ9M0F81e-148NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A2S3HYN20.0A0A2S3HYN2_9POAL; Uncharacterized protein
STRINGGRMZM2G166721_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-133NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]