PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462851050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | LBD | ||||||||
Protein Properties | Length: 346aa MW: 36583.6 Da PI: 10.3408 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 66.8 | 4.9e-21 | 43 | 89 | 1 | 47 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllk 47 +CaaCk+lrr+Ca++Cv+apyfp ++p+kfanvhk+FGasnv+kll+ 462851050 43 PCAACKLLRRRCAAGCVFAPYFPPAEPHKFANVHKVFGASNVSKLLQ 89 7********************************************98 PP | |||||||
2 | DUF260 | 124 | 7.8e-39 | 244 | 344 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+ rr+C++dCv+apyf + + +++fa +h++FGa +v kll+++p ++r da+sslvyeA+ar+rdPvyG+v+ i++lqqq+e+l+a+lal+++ 462851050 244 PCAACKMYRRRCPEDCVFAPYFTSPKaARDFADLHRVFGAGHVRKLLQEIPVQHRGDAVSSLVYEANARVRDPVYGCVAAISSLQQQVETLQAQLALAQA 343 7*********************9977589********************************************************************998 PP DUF260 100 e 100 e 462851050 344 E 344 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 13.905 | 42 | 144 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.7E-20 | 43 | 90 | IPR004883 | Lateral organ boundaries, LOB |
PROSITE profile | PS50891 | 23.376 | 243 | 345 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.5E-38 | 244 | 342 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MHNCRNRTLG RPTQQRVRRL RQNPLPWKTR FARSSPPASA AAPCAACKLL RRRCAAGCVF 60 APYFPPAEPH KFANVHKVFG ASNVSKLLQV SALPSSVSSN LPLPVPGAAS ARKPGASQPT 120 CTHSWGAASQ APSSASAKHI SGEGERCGRH VHSFVSFQSL FLAMTETAAA AVADGASWGA 180 ASQAPSSASA KHISGEGERC GRHVHSFVSF QSLFLAMTET AAAAVADGAR SGVHGAGGGR 240 AATPCAACKM YRRRCPEDCV FAPYFTSPKA ARDFADLHRV FGAGHVRKLL QEIPVQHRGD 300 AVSSLVYEAN ARVRDPVYGC VAAISSLQQQ VETLQAQLAL AQAEMF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-35 | 40 | 346 | 8 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-35 | 40 | 346 | 8 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462851050 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT069911 | 2e-72 | BT069911.1 Zea mays full-length cDNA clone ZM_BFb0321D10 mRNA, complete cds. | |||
GenBank | KJ727650 | 2e-72 | KJ727650.1 Zea mays clone pUT5577 LOB transcription factor (LOB19) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020203399.1 | 1e-47 | LOB domain-containing protein 4-like | ||||
STRING | Lus10040638 | 4e-47 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP882 | 38 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 3e-37 | LOB domain-containing protein 4 |