PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462850820 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 320aa MW: 35581.4 Da PI: 10.1175 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.8 | 1.8e-20 | 10 | 55 | 2 | 47 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 +ien r vtf kRr+g+lKKA ELSvLC a+v viif s gkl+ 462850820 10 QIENPVHRRVTFFKRREGLLKKARELSVLCSADVGVIIFPSLGKLK 55 79*****************************************996 PP | |||||||
2 | SRF-TF | 64.2 | 1.4e-20 | 82 | 128 | 2 | 48 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 +ien r vtf kRr+g+lKKA ELSvLC a+v viif s gk+ e 462850820 82 QIENPVHRRVTFFKRREGLLKKARELSVLCSADVGVIIFPSLGKVTE 128 79******************************************987 PP | |||||||
3 | K-box | 22.1 | 6.2e-09 | 128 | 194 | 18 | 84 |
K-box 18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 ++e++ L++ei Lq+ +R G + + l L+ Le+ L+ + + Rs+K+ +l++ e lq+k 462850820 128 EHEVSLLREEIGLLQQGLRSTFGGGAADVRLDRLHALEKGLQLWIYQTRSTKEYILRSANEILQQKG 194 689*************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.1E-22 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.605 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.19E-21 | 1 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.0E-19 | 11 | 54 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.675 | 73 | 128 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.8E-23 | 73 | 132 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.09E-21 | 73 | 129 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-19 | 75 | 95 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.1E-19 | 83 | 128 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-19 | 95 | 110 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-19 | 110 | 131 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 7.126 | 124 | 218 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.6E-7 | 128 | 194 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MVRGKVRMQQ IENPVHRRVT FFKRREGLLK KARELSVLCS ADVGVIIFPS LGKLKFHQGQ 60 SKGRSSAGTQ KTMVRGKVRM QQIENPVHRR VTFFKRREGL LKKARELSVL CSADVGVIIF 120 PSLGKVTEHE VSLLREEIGL LQQGLRSTFG GGAADVRLDR LHALEKGLQL WIYQTRSTKE 180 YILRSANEIL QQKGYYDEQR RREAPGRGRS EQREEDEEED RGDERVLDGG GEDGEEDERE 240 LQKQRSPSPG ERACQHDSHG VGGLGGEEVP QPDALTLRIL PLRQGPAPIA VAVAVAARRS 300 AGDRQAGPAR AEGGECGRVG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462850820 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D3HSH0 | 5e-53 | A0A0D3HSH0_9ORYZ; Uncharacterized protein | ||||
STRING | OBART12G05930.1 | 8e-54 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 3e-24 | AGAMOUS-like 12 |