PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462850766 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 127aa MW: 14467.2 Da PI: 10.0559 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 60.7 | 4.6e-19 | 26 | 114 | 1 | 78 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknra..........t 78 lppGfrFhP+dee+++++L k+ ++ +++ vi ev++ k+eP p+ + ++ ++ew fFsk+d+ky t +r+nra t 462850766 26 LPPGFRFHPSDEEVISQFLMSKALHRL-SISGVIGEVNLDKSEPPLGPAssQKSKMREEWSFFSKKDSKYLTRTRTNRAtatasrtrraT 114 79********************98876.66689***********98884222223445****************9999834444444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.49E-17 | 18 | 120 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 21.973 | 26 | 127 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-10 | 27 | 121 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MSEVSVDNQA DEQVNVEDQA AWQLQLPPGF RFHPSDEEVI SQFLMSKALH RLSISGVIGE 60 VNLDKSEPPL GPASSQKSKM REEWSFFSKK DSKYLTRTRT NRATATASRT RRATRLGCWR 120 GYQALHR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in responses to drought stress and salt stress. Transactivates the stress response genes LEA19 and PM19L. {ECO:0000269|PubMed:19135985}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462850766 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt and cold stresses (PubMed:18813954, PubMed:19135985). Induced by drought stress (PubMed:19135985). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:19135985}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001147731.1 | 2e-30 | uncharacterized protein LOC100281341 | ||||
Swissprot | Q2RB33 | 3e-18 | NAC45_ORYSJ; NAC domain-containing protein 45 | ||||
TrEMBL | A0A3L6DHX3 | 5e-29 | A0A3L6DHX3_MAIZE; NAC domain-containing protein 100 | ||||
TrEMBL | B6SUI0 | 6e-29 | B6SUI0_MAIZE; GRAB2 protein | ||||
STRING | GRMZM2G159500_P02 | 1e-29 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39610.1 | 1e-15 | NAC domain containing protein 6 |
Publications ? help Back to Top | |||
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