PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462850655
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GRF
Protein Properties Length: 310aa    MW: 33018.1 Da    PI: 5.2784
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462850655genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC72.35.5e-23221265145
        WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                ++epgrCrRtDGKkWRC+r +++++k+CErH+hrgr+r  + ++e
  462850655 221 EPEPGRCRRTDGKKWRCWRSTIPNEKYCERHMHRGRKRPVQLVVE 265
                69************************************9998875 PP

2QLQ545.1e-19155190237
        QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                aFTa+Qlq+L++Q  +y+y+aa++PvP +L+++i+k
  462850655 155 AFTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWK 190
                8*********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.7E-8154190IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088807.8E-12155189IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.922155190IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166722.471221265IPR014977WRC domain
PfamPF088791.3E-19222260IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
FFSPIAPPLS VPYPRPSKLR ATGLSLPIRA QRYFFSALPR RRFVTMAAEG EAMNPAGGGG  60
GGDNYPQVAA AEEAAQDAMA QGTGQEFVGE QANQDGVDGV GGAGDKDDGA CRDLVLVEDP  120
EAVAVEDPEE AAATAALQEE MKALVASIPD GAGAAFTAMQ LQELEQQSRV YQYMAARVPV  180
PTHLVFPIWK SVTGASSEGA QKYPTLMGLA TLCLDFGKNP EPEPGRCRRT DGKKWRCWRS  240
TIPNEKYCER HMHRGRKRPV QLVVEDDEPD SASGSKATPG KAIEGAKKTD DKSTSNKKLA  300
VAAPAAVQST
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of cell proliferation in developing shoots and leaves (PubMed:24854713). Does not possess transactivation activity (PubMed:24854713). {ECO:0000269|PubMed:24854713}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462850655
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957654.11e-153growth-regulating factor 11
SwissprotA5HEG91e-153GRF10_MAIZE; GRF-interacting factor 10
TrEMBLK3ZW281e-152K3ZW28_SETIT; Uncharacterized protein
STRINGSi030809m1e-152(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67353152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.19e-30growth-regulating factor 5
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]
  3. Zhang D, et al.
    GRF-interacting factor1 Regulates Shoot Architecture and Meristem Determinacy in Maize.
    Plant Cell, 2018. 30(2): p. 360-374
    [PMID:29437990]