PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462850655 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | GRF | ||||||||
Protein Properties | Length: 310aa MW: 33018.1 Da PI: 5.2784 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 72.3 | 5.5e-23 | 221 | 265 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++epgrCrRtDGKkWRC+r +++++k+CErH+hrgr+r + ++e 462850655 221 EPEPGRCRRTDGKKWRCWRSTIPNEKYCERHMHRGRKRPVQLVVE 265 69************************************9998875 PP | |||||||
2 | QLQ | 54 | 5.1e-19 | 155 | 190 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 aFTa+Qlq+L++Q +y+y+aa++PvP +L+++i+k 462850655 155 AFTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWK 190 8*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.7E-8 | 154 | 190 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 7.8E-12 | 155 | 189 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.922 | 155 | 190 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 22.471 | 221 | 265 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.3E-19 | 222 | 260 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
FFSPIAPPLS VPYPRPSKLR ATGLSLPIRA QRYFFSALPR RRFVTMAAEG EAMNPAGGGG 60 GGDNYPQVAA AEEAAQDAMA QGTGQEFVGE QANQDGVDGV GGAGDKDDGA CRDLVLVEDP 120 EAVAVEDPEE AAATAALQEE MKALVASIPD GAGAAFTAMQ LQELEQQSRV YQYMAARVPV 180 PTHLVFPIWK SVTGASSEGA QKYPTLMGLA TLCLDFGKNP EPEPGRCRRT DGKKWRCWRS 240 TIPNEKYCER HMHRGRKRPV QLVVEDDEPD SASGSKATPG KAIEGAKKTD DKSTSNKKLA 300 VAAPAAVQST |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of cell proliferation in developing shoots and leaves (PubMed:24854713). Does not possess transactivation activity (PubMed:24854713). {ECO:0000269|PubMed:24854713}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462850655 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957654.1 | 1e-153 | growth-regulating factor 11 | ||||
Swissprot | A5HEG9 | 1e-153 | GRF10_MAIZE; GRF-interacting factor 10 | ||||
TrEMBL | K3ZW28 | 1e-152 | K3ZW28_SETIT; Uncharacterized protein | ||||
STRING | Si030809m | 1e-152 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6735 | 31 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 9e-30 | growth-regulating factor 5 |
Publications ? help Back to Top | |||
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