PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462850151
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HD-ZIP
Protein Properties Length: 630aa    MW: 68191.1 Da    PI: 6.7715
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462850151genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox48.71.2e-157461756
               HHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox 17 elFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
               ++F+++++p++++r+ L+++lgL+ rq+k+WFqNrR+++k
  462850151  7 RMFKECPHPDENQRAALSRELGLEPRQIKFWFQNRRTQMK 46
               68***********************************998 PP
2START101.61.4e-3218531780205
                EEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
      START  80 etlevissg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlk 173
                 t++ + +g     + l lm+ e  ++ p+v  R+f f+Ry++q ++g w++vdvS+d +++ p   +  R+++lpSg+li +++ng+skvtwvehv+++
  462850151 185 HTVDILVNGmcggnESLILMYEEVHLMAPVVQtREFSFLRYSKQIEQGLWAVVDVSLDGNRDAPYGVPASRSRRLPSGCLIADMGNGYSKVTWVEHVEVE 284
                5666666666667878888888888888************************************999********************************* PP

                SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
      START 174 grlp.hwllrslvksglaegaktwvatlqrqce 205
                  +  + l+r +v sg+a+ga++w+a+lqr c 
  462850151 285 LTHNiDVLYRNIVLSGAAFGARRWLAALQRACD 317
                87766*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003893.4E-7152IPR001356Homeobox domain
PROSITE profilePS5007113.928748IPR001356Homeobox domain
CDDcd000862.93E-13749No hitNo description
PfamPF000464.7E-13746IPR001356Homeobox domain
SuperFamilySSF466893.34E-13754IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-15754IPR009057Homeodomain-like
PROSITE patternPS0002702346IPR017970Homeobox, conserved site
SMARTSM002342.5E-10109318IPR002913START domain
PROSITE profilePS5084827.029181321IPR002913START domain
PfamPF018526.7E-27185317IPR002913START domain
SuperFamilySSF559611.51E-19197320No hitNo description
SuperFamilySSF559614.94E-13384509No hitNo description
SuperFamilySSF559614.94E-13582622No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MVFDGCRMFK ECPHPDENQR AALSRELGLE PRQIKFWFQN RRTQMKAQHE RQDNCFLRAE  60
NDKIRCENIT MREALKNIIC PNCGGPPIGE DFFDEQKLRM ENARLKEELD RVSSITSKYL  120
GRPFTQMPPV PSMSVSSPLD LSVGGGMAGL GSPSLDQLDL FGAAVSSSAG MGSSSSAASG  180
MAGAHTVDIL VNGMCGGNES LILMYEEVHL MAPVVQTREF SFLRYSKQIE QGLWAVVDVS  240
LDGNRDAPYG VPASRSRRLP SGCLIADMGN GYSKVTWVEH VEVELTHNID VLYRNIVLSG  300
AAFGARRWLA ALQRACDRFA SAAALLGPHQ DPSGLTPEGK RGMMRLSQRM VANFCGSLCS  360
SPMQRWALLA LVRVSSHRAA EPGHPSGVVL CAATSIWLPV PGDHVFAFVR DETARSQWDV  420
LSNGNPVQEV SRITHGANPG NSISLLRSVL HSAPNSSMLI LQESWTDASG SLVVYSPIDL  480
PAANIVMSGD DPSSIPLLPS GFVILPDGQP GAGGASSSSA PLAXXXXXXX XXXXXXXXXX  540
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXTPLASA SPGCVVTVAF QILISSLPSA  600
RLSAESVTTV NTLISTTVRQ LRTALNCAVP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462850151
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002438026.10.0homeobox-leucine zipper protein ROC8
SwissprotQ69T581e-169ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLA0A0D9WN360.0A0A0D9WN36_9ORYZ; Uncharacterized protein
STRINGLPERR06G06240.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29123770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.11e-106homeodomain GLABROUS 11