PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462849857 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | bHLH | ||||||||
Protein Properties | Length: 290aa MW: 31734.7 Da PI: 11.5242 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.3 | 4.9e-12 | 93 | 136 | 4 | 52 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 +h + ErrRR+r+N++fe Lr llP+ K +Ka++L k+ eY++ 462849857 93 NHMISERRRRERLNESFEALRGLLPPG-----SKKDKATVLAKTLEYMN 136 78999********************95.....599************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.466 | 89 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-16 | 89 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.8E-16 | 92 | 158 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.8E-10 | 93 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.4E-12 | 95 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.51E-4 | 104 | 143 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
PHHPRHGNNH RARRWPWRGG TATAFRAYSA ALAPRRQTGG GAPGQRMIKM GISILRRMHM 60 LRFSSRERDA GAAVAQPGEQ DDDVAAPSSS QLNHMISERR RRERLNESFE ALRGLLPPGS 120 KKDKATVLAK TLEYMNILVA QISDLEARNR TLESRAQQRA NGGSKELMYS SSEQRQEVLR 180 QGLSGTSGRV QVHVMSGSAS TSSSSSSSRR QEVTVRVEAR AEGDVAELVT RVLAAIRKTG 240 RFTVVAVDAR RTSGDGIIAQ ATFTLRATAA EFDEVSLKEV VMKAAEDSST |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 97 | 102 | ERRRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462849857 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022679086.1 | 1e-109 | putative transcription factor bHLH041 isoform X2 | ||||
TrEMBL | A0A2T7F3R8 | 1e-110 | A0A2T7F3R8_9POAL; Uncharacterized protein | ||||
STRING | Si019540m | 4e-96 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3977 | 33 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 3e-20 | bHLH family protein |