PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462849598
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family FAR1
Protein Properties Length: 779aa    MW: 88962.1 Da    PI: 7.0499
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462849598genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR172.68.6e-2354140290
       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 Y++Y++++GFsvrk k+++   +++i +++++Cskeg + +e  +  +++ +r+ trt+Cka+++ + +++g+w v++++ eHnH+la
  462849598  54 LYCDYGHRIGFSVRKGKQSYFIGTKNIRTKDYYCSKEGLKYDEPVT--EANFNRPDTRTNCKAMIRFRVDEKGRWTVIRFVPEHNHQLA 140
                7********************9*******************99988..9999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-2054140IPR004330FAR1 DNA binding domain
PfamPF105511.3E-33262355IPR018289MULE transposase domain
PROSITE profilePS509669.47540578IPR007527Zinc finger, SWIM-type
PfamPF044341.8E-6544575IPR007527Zinc finger, SWIM-type
SMARTSM005751.0E-6553580IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 779 aa     Download sequence    Send to blast
MEGTQDSQEE RLQRRENGDA AEKVGDYGNA LSRKEATEEL LGCVVHSEEE AYRLYCDYGH  60
RIGFSVRKGK QSYFIGTKNI RTKDYYCSKE GLKYDEPVTE ANFNRPDTRT NCKAMIRFRV  120
DEKGRWTVIR FVPEHNHQLA KPGERHMLRS AKSLAVGKSG VIDPSASTET HQINGLSDMI  180
EGDISENPDF TIRDCYNQVS MQAITIIEAG DSQNLVSYFK RRTNEEGMFY WDVQVDQEGR  240
MTNFFYRDGK SRNDYDCFGD AVIFDTTYRT NKYNLICAPF VGVDHHWQNV VFGCAFLLDE  300
SVASYVWLFK SFLESMGGRS PKSIFTDQDE AIMQAIEQVF PNTQHCFSYW HILKNAQSHL  360
GALNTSQGFQ NMLMKCMQGS DTEENLEESW TAMIQEFKLH DNNWLIDLYR FRHKWCSAFH  420
KDTFDGGINS SQWGEVSNSI LNGISDESTS LTRFAILLEK VIKILRRNES EEDFRCSQTA  480
PVRAVKHSTV LKQAAESYTH RIYKLFEAEF LDGCGATSCH ETSSGGNLLR YEITMQGRGS  540
KVSAALDTST MEITCGCRKF ERMGILCSHA LKAFSLQNVD TIPEKYILKR WTKDAKRSVY  600
KLGQDDSTQQ ECTEAELAYR NRAMQYAYNL IMKSQELEES RKIFWDSLET GEKALEVFFE  660
MRDLRTQAAK DASKKEKKKK KPPKGPISKK AKQVPTSSSA GRELIVQTND HQFQSAQGGP  720
VNATIGRPIY YQGFTSTPIQ TNQIYMHPNM HTMPLCTPQD LPAYAPVRPN PNFGGTKNI
Cis-element ? help Back to Top
SourceLink
PlantRegMap462849598
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801016.10.0protein FAR1-RELATED SEQUENCE 9-like isoform X4
TrEMBLA0A2T8KRX90.0A0A2T8KRX9_9POAL; Uncharacterized protein
STRINGPavir.Bb02863.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-102FAR1-related sequence 5