PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462848776
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HSF
Protein Properties Length: 457aa    MW: 51312 Da    PI: 5.1325
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462848776genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind96.23.4e-301859101
                   HHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind   9 iledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkk 101
                   +++d++++ ++sws ++  sfvv+++ efa ++Lp yFkhsnf+SF+RQLn+YgF+k++ e+         weF+++ F kg+k+ll++i+r+k
     462848776   1 MVDDPSTDAVVSWSdASDASFVVWNSPEFAARLLPAYFKHSNFSSFIRQLNTYGFRKIDPER---------WEFANEFFVKGQKHLLKNIHRRK 85 
                   899***********66679****************************************999.........*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.99E-28184IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-26184IPR000232Heat shock factor (HSF)-type, DNA-binding
SMARTSM004154.3E-46184IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.6E-31184IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.2E-93345IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043403458IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-94658IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MVDDPSTDAV VSWSDASDAS FVVWNSPEFA ARLLPAYFKH SNFSSFIRQL NTYGFRKIDP  60
ERWEFANEFF VKGQKHLLKN IHRRKPIHSH SHQPGALPDN ERALFEDEID RLSREKATLQ  120
ADLWKFNQQQ SGATIQIEDL ERRVLDMEQR QVKMLNFLQQ ASKNPQFVNK LVKMAETSQI  180
FADAYHKRRR LPALDYGTES TETTSFYDDH SSTSKHEMGN LLNQHFSDKL KLGLCPAMAE  240
SNLITLSTQS SHEDNGRPHG KLPDCNRVGM ECLPLAPQMM ELSDTGTSIC PSKSACFTTA  300
VIDEGLLPCQ LSLTLASCSM DADRSQTSNA NGRSIDQDQG IDNPLDAATT ATMEKDDGIS  360
RCHDDSHQRA PIDTGTSAGA MTPHGNAQVA SEAPPAPPAV VNDKFWEQFL TERPGCSETE  420
EASSTLRREP SREQMEDNRQ PYQDTMNDRT DVQQLKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-1918436129Heat shock factor protein 1
5d5v_B4e-1918436129Heat shock factor protein 1
5d5v_D4e-1918436129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186190KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462848776
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952518.10.0heat stress transcription factor A-5
SwissprotQ6K6S50.0HSFA5_ORYSJ; Heat stress transcription factor A-5
TrEMBLA0A0E0K0070.0A0A0E0K007_ORYPU; Uncharacterized protein
STRINGOPUNC02G15430.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90003241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-106HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]